Tc02v2_t025510.2

Overview
NameTc02v2_t025510.2
Unique NameTc02v2_t025510.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1200
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Producttranscription initiation factor TFIID subunit 15, transcript variant X2
NoteTranscription initiation factor TFIID subunit 15
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609898
GenbankXM_007045239.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g025510Tc02v2_g025510Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p025510.2Tc02v2_p025510.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto127682auto127682Theobroma cacaoexon
exon-auto127683auto127683Theobroma cacaoexon
exon-auto127684auto127684Theobroma cacaoexon
exon-auto127685auto127685Theobroma cacaoexon
exon-auto127686auto127686Theobroma cacaoexon
exon-auto127687auto127687Theobroma cacaoexon
exon-auto127688auto127688Theobroma cacaoexon
exon-auto127689auto127689Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto127690auto127690Theobroma cacaoCDS
CDS-auto127691auto127691Theobroma cacaoCDS
CDS-auto127692auto127692Theobroma cacaoCDS
CDS-auto127693auto127693Theobroma cacaoCDS
CDS-auto127694auto127694Theobroma cacaoCDS
CDS-auto127695auto127695Theobroma cacaoCDS
CDS-auto127696auto127696Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t025510.2 ID=Tc02v2_t025510.2|Name=Tc02v2_t025510.2|organism=Theobroma cacao|type=mRNA|length=1200bp
ATGGCAAGCCATTCAGGAAGAGGAGTCCCATCAAATGGTTCTGTTTATGT
TTGTAATCTACCTCAGGGAACGGATGAAACTATGTTAGCTGAATATTTCG
GGACCATTGGCTTGCTAAAGAAAGATAAGCGAACTGGTCGACCTAAGATA
TGGTTATACAGAGACAAGGCAACAAATGAGCCGAAAGGAGATGCTACCGT
TACTTATGAGGATCCCCATGCTGCATTGGCTGCTGTTGAATGGTTTAACA
ACAAGGATTTCCATGGAAGCACGATTGGCGTTTTTATTGCAGAGAGTAAG
AATAGTAATGCTGGTGGCGATCCTCCAACTGTGGCTGGTGATGGTGGTGG
ATTGGAGGAAGATGCGGCTAGGGACATGAATGGGGGTGGTGGAAGGGGTA
GAGGTCGGGATGATGCTTCAGGACAAACATGGCAACAGGAGGGAGACTGG
CACTGTCCCAATACAAGTTGTTCCAATGTAAATTTCGCCTTCCGTGGTGT
GTGCAACCGCTGTGGAACTGCTCGACCTGCAGGTGCATCTGGTGGTGGTG
GAGGGGCTGGTGGTCATGGGAAGGGACGTGGTGCCCATGACTCTGGCAGT
CATGGCCGAGGAGCAGTAGGTGCTACTGGTGGACTTTTCGGCCCAAATGA
TTGGCCTTGTCCTATGTGTGGCAACATTAACTGGGCTAAGCGTACAAAAT
GCAATATATGCAACACCAATAAACCTGGTCACAATGAGGGTGGTGTGAGA
GGAGGACGTGGTGGTGGTTACAAGGAACTTGATGAAGAAGAGATAGAGGA
AACAAGACGACGTCGACGTGAGGCAGAAGAAGATGATGGTGAGATGTATG
ATGAGTTTGGCAATCTCAAGAAAAAATTCCGAGCCAAAACACAACAAGCT
GAAGCTGGACGAGGGCTACCAGGTTCGGGCCGTGCTGGCTGGGAGGTTGA
GGAACTAGGTGTGATTGACAGGGATGGAAGAGAAAGAAGCAGAGATAGGG
GAAGGGAACGGGACGATAGAGAAAGTAGCAAGAATAGAGATCGTGAAGAT
AGGGAAAGACGCCGTAGTCGAAGCAGAGAGAGGGATAGGGGAAAGGATCG
CAACCGTGATTATGTTTATGACCGAGATAGAGAATATGGACGGGATAGGG
AACGAGATCGAGATCGAGATCGAGATCGAGACCGAAGCAGGTATTACTGA
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protein sequence of Tc02v2_p025510.2

>Tc02v2_p025510.2 ID=Tc02v2_p025510.2|Name=Tc02v2_p025510.2|organism=Theobroma cacao|type=polypeptide|length=400bp
MASHSGRGVPSNGSVYVCNLPQGTDETMLAEYFGTIGLLKKDKRTGRPKI
WLYRDKATNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSTIGVFIAESK
NSNAGGDPPTVAGDGGGLEEDAARDMNGGGGRGRGRDDASGQTWQQEGDW
HCPNTSCSNVNFAFRGVCNRCGTARPAGASGGGGGAGGHGKGRGAHDSGS
HGRGAVGATGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVR
GGRGGGYKELDEEEIEETRRRRREAEEDDGEMYDEFGNLKKKFRAKTQQA
EAGRGLPGSGRAGWEVEELGVIDRDGRERSRDRGRERDDRESSKNRDRED
RERRRSRSRERDRGKDRNRDYVYDRDREYGRDRERDRDRDRDRDRSRYY*
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