Tc02v2_t025170.1

Overview
NameTc02v2_t025170.1
Unique NameTc02v2_t025170.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1110
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 40 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprotein TIFY 6B
NotePutative Protein TIFY 6B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609856
GenbankXM_007045182.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g025170Tc02v2_g025170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p025170.1Tc02v2_p025170.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto127099auto127099Theobroma cacaoexon
exon-auto127100auto127100Theobroma cacaoexon
exon-auto127101auto127101Theobroma cacaoexon
exon-auto127102auto127102Theobroma cacaoexon
exon-auto127103auto127103Theobroma cacaoexon
exon-auto127104auto127104Theobroma cacaoexon
exon-auto127105auto127105Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto127106auto127106Theobroma cacaoCDS
CDS-auto127107auto127107Theobroma cacaoCDS
CDS-auto127108auto127108Theobroma cacaoCDS
CDS-auto127109auto127109Theobroma cacaoCDS
CDS-auto127110auto127110Theobroma cacaoCDS
CDS-auto127111auto127111Theobroma cacaoCDS
CDS-auto127112auto127112Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t025170.1 ID=Tc02v2_t025170.1|Name=Tc02v2_t025170.1|organism=Theobroma cacao|type=mRNA|length=1110bp
ATGGAGAGAGATTTTATGGGTTTGAACTCAAAAGAATCATTGGTTGTGGT
TAAGGAAGAGGTTAACTGTGAGGGGTACAAAGAAATTGGTTTTACTAAAC
GTTCAGGGATACAATGGCCATTTTCAAACAAGGTTTCTGCTGTTCCACAG
CTGATGAATTTTAATTTTGCTCAAGGAGATAAAATTAAAAAGATTGGATC
TGATGCTCTGGTATCCCCTGGGTTCATGCCTATCTCAACAGCAGATGCTG
CTGAAGTTCAGAAATCGTTCAATCACAATGGGCAAGGTGGCAGTCATTTT
TCATTGACAGCTTGTTCTGTGCAACATGATCTACATCCTGTTCAATGTCC
TTATGATGTGAAGATGTTTCCAGTCTCAAACCAGGCAGTTTCTGTTTCTG
TGAGCAACCCTTTCATGAAGAATCATTTTGCAACTGCTGGTCTAAATTTG
CCTGTTACTTCCATGAAGCCACAATTACTTGGAGGAATTCCAGTGACAAC
TCCACATTCAATTCTTCCCACCCTTGGTTCTGTTGTTGGAAGTATTGAAC
CGTGGAAAAGTGTCAAGGCCTCTGGATCGCCTGCTCAATTGACTATCTTT
TATGCGGGTACGGTGAATGTCTACGAAGATATCACCCCTGAGAAGGCTCA
GGCTATCATGTACCTGGCTCAAAATGGATCTTCCGTGGCTTCTAGTGTGG
CACACCCAAAAGTGCAAGTCCAGACACCTATTTCAAAGCCAGTTCAAGTT
GATAGTGTTCCTGCAAACCAGCTTATAAACACACAACTGAGCTCTGGTCT
CTCAAGCCCTTTATCTGTTTCATCTCATAATGGTGCTCAGTCCAGGAGTG
GGTCCACTACCACTGATGAAGTGATGGCATGCAAGAGCACAGGAACTCCA
ACAACCCCTATTAGCAAAATGGAGCCTCCAAAAATGGTGAATACCATGGG
ATCTGTTGCTGCAACCAGCATGATGCCTTCTGTTCCACAAGCTCGCAAAG
CTTCCTTGGCTCGGTTTTTGGAGAAGCGCAAGGAAAGGGTTATGAGTGCA
GCGCCATACAATCTAAGCAAGAAGTTTCTAGATTGTGCTACCCTGGAATC
CAATGCATGA
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protein sequence of Tc02v2_p025170.1

>Tc02v2_p025170.1 ID=Tc02v2_p025170.1|Name=Tc02v2_p025170.1|organism=Theobroma cacao|type=polypeptide|length=370bp
MERDFMGLNSKESLVVVKEEVNCEGYKEIGFTKRSGIQWPFSNKVSAVPQ
LMNFNFAQGDKIKKIGSDALVSPGFMPISTADAAEVQKSFNHNGQGGSHF
SLTACSVQHDLHPVQCPYDVKMFPVSNQAVSVSVSNPFMKNHFATAGLNL
PVTSMKPQLLGGIPVTTPHSILPTLGSVVGSIEPWKSVKASGSPAQLTIF
YAGTVNVYEDITPEKAQAIMYLAQNGSSVASSVAHPKVQVQTPISKPVQV
DSVPANQLINTQLSSGLSSPLSVSSHNGAQSRSGSTTTDEVMACKSTGTP
TTPISKMEPPKMVNTMGSVAATSMMPSVPQARKASLARFLEKRKERVMSA
APYNLSKKFLDCATLESNA*
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