Tc02v2_t024400.5

Overview
NameTc02v2_t024400.5
Unique NameTc02v2_t024400.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1200
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productnicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic, transcript variant X4
NoteNicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609757
GenbankXM_018116416.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g024400Tc02v2_g024400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p024400.5Tc02v2_p024400.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto125767auto125767Theobroma cacaoexon
exon-auto125768auto125768Theobroma cacaoexon
exon-auto125769auto125769Theobroma cacaoexon
exon-auto125770auto125770Theobroma cacaoexon
exon-auto125771auto125771Theobroma cacaoexon
exon-auto125772auto125772Theobroma cacaoexon
exon-auto125773auto125773Theobroma cacaoexon
exon-auto125774auto125774Theobroma cacaoexon
exon-auto125775auto125775Theobroma cacaoexon
exon-auto125776auto125776Theobroma cacaoexon
exon-auto125777auto125777Theobroma cacaoexon
exon-auto125778auto125778Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto125779auto125779Theobroma cacaoCDS
CDS-auto125780auto125780Theobroma cacaoCDS
CDS-auto125781auto125781Theobroma cacaoCDS
CDS-auto125782auto125782Theobroma cacaoCDS
CDS-auto125783auto125783Theobroma cacaoCDS
CDS-auto125784auto125784Theobroma cacaoCDS
CDS-auto125785auto125785Theobroma cacaoCDS
CDS-auto125786auto125786Theobroma cacaoCDS
CDS-auto125787auto125787Theobroma cacaoCDS
CDS-auto125788auto125788Theobroma cacaoCDS
CDS-auto125789auto125789Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t024400.5 ID=Tc02v2_t024400.5|Name=Tc02v2_t024400.5|organism=Theobroma cacao|type=mRNA|length=1200bp
ATGTTTTCTATTTCCTCAATAGTTTTGCCTCGTTGGTGCACAACTTCAAG
CTGTAGGCATATTGTTAGAATGGCTGCTGTTCACACTACAATTGCTGGAT
TATCATTCGAAGCTGTGGCAATAAAGCCTCCTTCACACCCTACATATGAT
TTAGAGGGCATCATTAAGCTTGCCCTTGCTGAAGATGCTGGTGGTCGAGG
GGATGTGACTAGTATGGCCACTATTCCATTTGACATGGAAGTTGAAGCCC
ATTTTCTGGCTAAGGATGATGGTATCATTGCTGGAATTGTGCTTGCAGAG
ATGGTTTTTCAAGAGGTTGATCCTTCTTTGAAGGTGAAGTGGTCTCGAAA
GGATGGAGATTATGTCCAGAAGGGGCTGCAGTTTGGAAAAGTTTATGGAA
GGGCACATAGCATTGTCGTAGCTGAAAGAATAGCTCTGAACTTTATGCAG
CGGATGAGTGGTATAGCGACACTAACTAAGGCAATGGCTGATGCTGCACA
CCCTGCATACATCTTAGAGACAAGAAAAACTGCTCCAGGCTTACGTTTGG
TGGACAAGTGGGCGGTTCTAATTGGTGGAGGAAGGAATCATAGACTGGGT
TTATTTGATATGGTGTTGATAAAGGATAATCATATATCAATAGCTGGAGG
AATCAGTAATGCCCTTAGATCTGTTGACCGGTATTTAGAGCAAGAAAATC
TTCAAATGGAGGTTGAGGTTGAGACCCGGACTCATGAGGAAGTAAAGGAG
GTATTGCAGTATGCATCTCAAACGAAGACTTCCTTGACCCGGATAATGTT
GGATAATATGGTTGTTCCTCTTCCAAATGGTGATGTTGATGTGTCTATGC
TTAAAGAAGCTGTGGAGCTAATAAATGGGAAATTTGAGACGGAGGCATCT
GGAAATGTTACTTTTGAAACTGTACATAAAATTGGACAAACTGGAGTTAC
CTACATATCCAGGATATGCCACTGCTTTCTTTGGCACCATACGGGAGCCA
TGTCTCTTCAGGCAGGTACAGAGGTTGAGAATTACATGCCACACAATGAT
CTCTGTGGTTTTCAGTGCTCAAATCAAGGTTTTCTAGTTGTCTTTAGTAA
AAATGGTGCACTCACGCATTCTGTGAAAGCACTTGATATATCCCTCAAAA
TTGATACTGAGTTGGCTCTGGAAGTTGGAAGGCGAACAAAACGGGCATGA
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protein sequence of Tc02v2_p024400.5

>Tc02v2_p024400.5 ID=Tc02v2_p024400.5|Name=Tc02v2_p024400.5|organism=Theobroma cacao|type=polypeptide|length=400bp
MFSISSIVLPRWCTTSSCRHIVRMAAVHTTIAGLSFEAVAIKPPSHPTYD
LEGIIKLALAEDAGGRGDVTSMATIPFDMEVEAHFLAKDDGIIAGIVLAE
MVFQEVDPSLKVKWSRKDGDYVQKGLQFGKVYGRAHSIVVAERIALNFMQ
RMSGIATLTKAMADAAHPAYILETRKTAPGLRLVDKWAVLIGGGRNHRLG
LFDMVLIKDNHISIAGGISNALRSVDRYLEQENLQMEVEVETRTHEEVKE
VLQYASQTKTSLTRIMLDNMVVPLPNGDVDVSMLKEAVELINGKFETEAS
GNVTFETVHKIGQTGVTYISRICHCFLWHHTGAMSLQAGTEVENYMPHND
LCGFQCSNQGFLVVFSKNGALTHSVKALDISLKIDTELALEVGRRTKRA*
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