Tc02v2_t024400.4

Overview
NameTc02v2_t024400.4
Unique NameTc02v2_t024400.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1194
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productnicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic, transcript variant X8
NoteNicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609757
GenbankXM_018116420.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g024400Tc02v2_g024400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p024400.4Tc02v2_p024400.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto125742auto125742Theobroma cacaoexon
exon-auto125743auto125743Theobroma cacaoexon
exon-auto125744auto125744Theobroma cacaoexon
exon-auto125745auto125745Theobroma cacaoexon
exon-auto125746auto125746Theobroma cacaoexon
exon-auto125747auto125747Theobroma cacaoexon
exon-auto125748auto125748Theobroma cacaoexon
exon-auto125749auto125749Theobroma cacaoexon
exon-auto125750auto125750Theobroma cacaoexon
exon-auto125751auto125751Theobroma cacaoexon
exon-auto125752auto125752Theobroma cacaoexon
exon-auto125753auto125753Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto125754auto125754Theobroma cacaoCDS
CDS-auto125755auto125755Theobroma cacaoCDS
CDS-auto125756auto125756Theobroma cacaoCDS
CDS-auto125757auto125757Theobroma cacaoCDS
CDS-auto125758auto125758Theobroma cacaoCDS
CDS-auto125759auto125759Theobroma cacaoCDS
CDS-auto125760auto125760Theobroma cacaoCDS
CDS-auto125761auto125761Theobroma cacaoCDS
CDS-auto125762auto125762Theobroma cacaoCDS
CDS-auto125763auto125763Theobroma cacaoCDS
CDS-auto125764auto125764Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t024400.4 ID=Tc02v2_t024400.4|Name=Tc02v2_t024400.4|organism=Theobroma cacao|type=mRNA|length=1194bp
ATGTTTTCTATTTCCTCAATAGTTTTGCCTCGTTGGTGCACAACTTCAAG
GCATATTGTTAGAATGGCTGCTGTTCACACTACAATTGCTGGATTATCAT
TCGAAGCTGTGGCAATAAAGCCTCCTTCACACCCTACATATGATTTAGAG
GGCATCATTAAGCTTGCCCTTGCTGAAGATGCTGGTGGTCGAGGGGATGT
GACTAGTATGGCCACTATTCCATTTGACATGGAAGTTGAAGCCCATTTTC
TGGCTAAGGATGATGGTATCATTGCTGGAATTGTGCTTGCAGAGATGGTT
TTTCAAGAGGTTGATCCTTCTTTGAAGGTGAAGTGGTCTCGAAAGGATGG
AGATTATGTCCAGAAGGGGCTGCAGTTTGGAAAAGTTTATGGAAGGGCAC
ATAGCATTGTCGTAGCTGAAAGAATAGCTCTGAACTTTATGCAGCGGATG
AGTGGTATAGCGACACTAACTAAGGCAATGGCTGATGCTGCACACCCTGC
ATACATCTTAGAGACAAGAAAAACTGCTCCAGGCTTACGTTTGGTGGACA
AGTGGGCGGTTCTAATTGGTGGAGGAAGGAATCATAGACTGGGTTTATTT
GATATGGTGTTGATAAAGGATAATCATATATCAATAGCTGGAGGAATCAG
TAATGCCCTTAGATCTGTTGACCGGTATTTAGAGCAAGAAAATCTTCAAA
TGGAGGTTGAGGTTGAGACCCGGACTCATGAGGAAGTAAAGGAGGTATTG
CAGTATGCATCTCAAACGAAGACTTCCTTGACCCGGATAATGTTGGATAA
TATGGTTGTTCCTCTTCCAAATGGTGATGTTGATGTGTCTATGCTTAAAG
AAGCTGTGGAGCTAATAAATGGGAAATTTGAGACGGAGGCATCTGGAAAT
GTTACTTTTGAAACTGTACATAAAATTGGACAAACTGGAGTTACCTACAT
ATCCAGGATATGCCACTGCTTTCTTTGGCACCATACGGGAGCCATGTCTC
TTCAGGCAGGTACAGAGGTTGAGAATTACATGCCACACAATGATCTCTGT
GGTTTTCAGTGCTCAAATCAAGGTTTTCTAGTTGTCTTTAGTAAAAATGG
TGCACTCACGCATTCTGTGAAAGCACTTGATATATCCCTCAAAATTGATA
CTGAGTTGGCTCTGGAAGTTGGAAGGCGAACAAAACGGGCATGA
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protein sequence of Tc02v2_p024400.4

>Tc02v2_p024400.4 ID=Tc02v2_p024400.4|Name=Tc02v2_p024400.4|organism=Theobroma cacao|type=polypeptide|length=398bp
MFSISSIVLPRWCTTSRHIVRMAAVHTTIAGLSFEAVAIKPPSHPTYDLE
GIIKLALAEDAGGRGDVTSMATIPFDMEVEAHFLAKDDGIIAGIVLAEMV
FQEVDPSLKVKWSRKDGDYVQKGLQFGKVYGRAHSIVVAERIALNFMQRM
SGIATLTKAMADAAHPAYILETRKTAPGLRLVDKWAVLIGGGRNHRLGLF
DMVLIKDNHISIAGGISNALRSVDRYLEQENLQMEVEVETRTHEEVKEVL
QYASQTKTSLTRIMLDNMVVPLPNGDVDVSMLKEAVELINGKFETEASGN
VTFETVHKIGQTGVTYISRICHCFLWHHTGAMSLQAGTEVENYMPHNDLC
GFQCSNQGFLVVFSKNGALTHSVKALDISLKIDTELALEVGRRTKRA*
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