Tc02v2_t023930.4

Overview
NameTc02v2_t023930.4
Unique NameTc02v2_t023930.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2514
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Producturease, transcript variant X2
NoteUrease
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609708
GenbankXM_018116442.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023930Tc02v2_g023930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023930.4Tc02v2_p023930.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto124697auto124697Theobroma cacaoexon
exon-auto124698auto124698Theobroma cacaoexon
exon-auto124699auto124699Theobroma cacaoexon
exon-auto124700auto124700Theobroma cacaoexon
exon-auto124701auto124701Theobroma cacaoexon
exon-auto124702auto124702Theobroma cacaoexon
exon-auto124703auto124703Theobroma cacaoexon
exon-auto124704auto124704Theobroma cacaoexon
exon-auto124705auto124705Theobroma cacaoexon
exon-auto124706auto124706Theobroma cacaoexon
exon-auto124707auto124707Theobroma cacaoexon
exon-auto124708auto124708Theobroma cacaoexon
exon-auto124709auto124709Theobroma cacaoexon
exon-auto124710auto124710Theobroma cacaoexon
exon-auto124711auto124711Theobroma cacaoexon
exon-auto124712auto124712Theobroma cacaoexon
exon-auto124713auto124713Theobroma cacaoexon
exon-auto124714auto124714Theobroma cacaoexon
exon-auto124715auto124715Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto124716auto124716Theobroma cacaoCDS
CDS-auto124717auto124717Theobroma cacaoCDS
CDS-auto124718auto124718Theobroma cacaoCDS
CDS-auto124719auto124719Theobroma cacaoCDS
CDS-auto124720auto124720Theobroma cacaoCDS
CDS-auto124721auto124721Theobroma cacaoCDS
CDS-auto124722auto124722Theobroma cacaoCDS
CDS-auto124723auto124723Theobroma cacaoCDS
CDS-auto124724auto124724Theobroma cacaoCDS
CDS-auto124725auto124725Theobroma cacaoCDS
CDS-auto124726auto124726Theobroma cacaoCDS
CDS-auto124727auto124727Theobroma cacaoCDS
CDS-auto124728auto124728Theobroma cacaoCDS
CDS-auto124729auto124729Theobroma cacaoCDS
CDS-auto124730auto124730Theobroma cacaoCDS
CDS-auto124731auto124731Theobroma cacaoCDS
CDS-auto124732auto124732Theobroma cacaoCDS
CDS-auto124733auto124733Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023930.4 ID=Tc02v2_t023930.4|Name=Tc02v2_t023930.4|organism=Theobroma cacao|type=mRNA|length=2514bp
ATGAGACTAACCCCAAGAGAAGTGGAGAAGCTAGGCCTTCATAATGCAGG
GTACCTTGCCCAGAAGCGTCTGGCGCGTGGGCTTAGGCTCAATTATACTG
AAGCTGTTGCTCTCATAGCCACTCAGATTCTGGAGTTTGTTCGTGATGGT
GACAAGAATGTGGCAGAATTGATGGACATTGGGCAACGACTTTTAGGAAG
GAAGCAAGTTCTTCCAGCTGTTCCACATTTGTTGGATTCTGTTCAGGTTG
AAGGGACATTTCCTGATGGAACAAAGTTAATCACTATTCACGGTGCAATT
GCTAGTGAAAATGGAAACCTGGAGCTTGCTTTACGTGGCTCTTTTCTACC
TGTGCCTTCCCCTGAGAAATTTCTTGAAATGGAAGATAAAACAATTCCTG
GTGACATGATCTTCAAAGGTGGGACTATTATGCTTAATCTTGGAAGGAAA
GCAGTAAGTATCAAAGTGACTAACACTGGAGACAGGCCAATTCAGGTTGG
AAGCCATTATCACTTTATAGAGGTGAACCCCTTCTTGGTTTTTGATCGTA
GGAAAGCATATGGCATGCGCTTAAATATACCAGCAGGAACAGCTACAAGA
TTTGAGCCTGGAGAATGTAAAACTGTTGTGCTTGTCAGCATTGGCGGTAG
GAAAGTGATCAGAGGAGGAAATGGTATTGTTGATGGTCCTGTTGATGATG
CCAATGTTGAAATAGTGATGGAAACCATAAAGAGAGAAGGTTACGGGAAT
CTGGAAGATGCAAATGCTAGTGAAGGTGTCACCGGAGAAGATTCTGCTTT
AAGCACAATAATTTCTTGCGAGAAATATGCTAACATGTATGGCCCCACTA
CTGGTGACAAAATTCGGCTAGGTGATACAAACTTGTATGCTGAAATAGAA
AGAGATTTTGCTGTATATGGTGATGAATGTGTCTTTGGGGGTGGAAAAGT
TATAAGAGATGGCATGGGTCAATCATGTGGGCATCCACCAGCTGAATCTT
TAGATATTGCTATAACAAATGCTGTAATCATAGATTACACTGGTATTTTT
AAGGCAGATATTGGTATTAAAAATGGCCTTATTGTTGCACTTGGGAAAGC
AGGCAATCCAGATACCATGGATGGTGTTTTCCCTAATATGATCATTGGTG
TTAACACTGAGGTTATTGCTGGGGAAGGATTGCTTGTAACTGCAGGGGCT
ATAGACTGTCATGTGCACTTCATATGCCCTCAGCTGGTTCATGAAGCAAT
ATCAAGTGGCTACACAACATTAATAGGAGGTGGAACTGGACCTGCTGAAG
GGACACGTGCAACTACTTGTACACCAGCACCATTACAGATGAAATTGATG
CTGCAGTCCACTGATGAGTTCCCTCTAAATTTTGGCTTCACAGGGAAGGG
GAATGGTTCCAAACCTGATGAACTACATGAAATAATCAAGGCTGGAGCTA
TGGGATTGAAGTTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGAC
ACTAGCTTGACTGTTGCAGAACAATTTGATGTACAGGTTAATATACATAC
TGACACCTTGAATGAATCTGGATTTGTGGAACATACAATTGCTGCATTTA
AAGAAAGAACTGTTCATGCTTATCACAGTGAAGGTGCTGGTGGTGGTCAT
GCTCCAGATATTATCAAAGTATGTGGCGTTAAAAATGTCCTCCCCTCATC
AACAAATCCAACACGCCCTTATACTTCCAATACTATAGATGAACATCTTG
ACATGCTGATGGTTTGCCATCACCTGGACAAGGATATTCCAGAAGATGTA
GCTTTTGCTGAATCAAGGATTAGGGCTGAAACAATTGCTGCAGAAGACAT
ATTACATGACATGGGGGCAATCAGCATTATATCTTCTGATTCACAGGCCA
TGGGTCGCATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCCACAAG
ATGAAATCTCAAAGAGGGCCAATTGGTCCTAGCGGATCAGACAGTGACAA
TATAAGGATCAAACGTTATGTTGCAAAATACACCATAAATCCGGCTATTG
CTAATGGGATTGCAGAATTTGTTGGTTCAGTAGAGGTGGGAAAGTTGGCT
GATCTTGTTTTATGGAAGCCATCCTTTTTTGGGGCAAAACCTGAAATGGT
AATCAAAGGTGGTGCAGTTACTTGGGCAAATATGGGAGACCCTAATGCAA
GCATACCAACACCTCAACCGGTTTTGTCAAGGCCGATGTTTGGAGCATTT
GGCAAGGCTGGAAGTGCGAACTCCTTGGCTTTCATCAGCAAGGCTGCTTT
AGATTGTGGAATCAAAGGGTTATATGGACTCAAGAAAAGGGTGGAAGCTG
TTGGCAATACCAGAAGTCTGACCAAGCTTGACATGAAGCTCAATGATGCC
CTCCCAATTATCACAGTGGACCCAGAAACATATACTGTGACAGCTGACGG
TGAGGTCCTCACCTGTGCTGCAGCAACTACTGTTCCACTGTCTCGGAATT
ATTTCCTCTTCTAG
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protein sequence of Tc02v2_p023930.4

>Tc02v2_p023930.4 ID=Tc02v2_p023930.4|Name=Tc02v2_p023930.4|organism=Theobroma cacao|type=polypeptide|length=838bp
MRLTPREVEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQILEFVRDG
DKNVAELMDIGQRLLGRKQVLPAVPHLLDSVQVEGTFPDGTKLITIHGAI
ASENGNLELALRGSFLPVPSPEKFLEMEDKTIPGDMIFKGGTIMLNLGRK
AVSIKVTNTGDRPIQVGSHYHFIEVNPFLVFDRRKAYGMRLNIPAGTATR
FEPGECKTVVLVSIGGRKVIRGGNGIVDGPVDDANVEIVMETIKREGYGN
LEDANASEGVTGEDSALSTIISCEKYANMYGPTTGDKIRLGDTNLYAEIE
RDFAVYGDECVFGGGKVIRDGMGQSCGHPPAESLDIAITNAVIIDYTGIF
KADIGIKNGLIVALGKAGNPDTMDGVFPNMIIGVNTEVIAGEGLLVTAGA
IDCHVHFICPQLVHEAISSGYTTLIGGGTGPAEGTRATTCTPAPLQMKLM
LQSTDEFPLNFGFTGKGNGSKPDELHEIIKAGAMGLKLHEDWGTTPAAID
TSLTVAEQFDVQVNIHTDTLNESGFVEHTIAAFKERTVHAYHSEGAGGGH
APDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLDKDIPEDV
AFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHK
MKSQRGPIGPSGSDSDNIRIKRYVAKYTINPAIANGIAEFVGSVEVGKLA
DLVLWKPSFFGAKPEMVIKGGAVTWANMGDPNASIPTPQPVLSRPMFGAF
GKAGSANSLAFISKAALDCGIKGLYGLKKRVEAVGNTRSLTKLDMKLNDA
LPIITVDPETYTVTADGEVLTCAAATTVPLSRNYFLF*
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