Tc02v2_t023930.3

Overview
NameTc02v2_t023930.3
Unique NameTc02v2_t023930.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2514
Properties
Property NameValue
NoteUrease
Model evidenceSupporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Producturease, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609708
GenbankXM_007044956.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023930Tc02v2_g023930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023930.3Tc02v2_p023930.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto124657auto124657Theobroma cacaoexon
exon-auto124658auto124658Theobroma cacaoexon
exon-auto124659auto124659Theobroma cacaoexon
exon-auto124660auto124660Theobroma cacaoexon
exon-auto124661auto124661Theobroma cacaoexon
exon-auto124662auto124662Theobroma cacaoexon
exon-auto124663auto124663Theobroma cacaoexon
exon-auto124664auto124664Theobroma cacaoexon
exon-auto124665auto124665Theobroma cacaoexon
exon-auto124666auto124666Theobroma cacaoexon
exon-auto124667auto124667Theobroma cacaoexon
exon-auto124668auto124668Theobroma cacaoexon
exon-auto124669auto124669Theobroma cacaoexon
exon-auto124670auto124670Theobroma cacaoexon
exon-auto124671auto124671Theobroma cacaoexon
exon-auto124672auto124672Theobroma cacaoexon
exon-auto124673auto124673Theobroma cacaoexon
exon-auto124674auto124674Theobroma cacaoexon
exon-auto124675auto124675Theobroma cacaoexon
exon-auto124676auto124676Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto124677auto124677Theobroma cacaoCDS
CDS-auto124678auto124678Theobroma cacaoCDS
CDS-auto124679auto124679Theobroma cacaoCDS
CDS-auto124680auto124680Theobroma cacaoCDS
CDS-auto124681auto124681Theobroma cacaoCDS
CDS-auto124682auto124682Theobroma cacaoCDS
CDS-auto124683auto124683Theobroma cacaoCDS
CDS-auto124684auto124684Theobroma cacaoCDS
CDS-auto124685auto124685Theobroma cacaoCDS
CDS-auto124686auto124686Theobroma cacaoCDS
CDS-auto124687auto124687Theobroma cacaoCDS
CDS-auto124688auto124688Theobroma cacaoCDS
CDS-auto124689auto124689Theobroma cacaoCDS
CDS-auto124690auto124690Theobroma cacaoCDS
CDS-auto124691auto124691Theobroma cacaoCDS
CDS-auto124692auto124692Theobroma cacaoCDS
CDS-auto124693auto124693Theobroma cacaoCDS
CDS-auto124694auto124694Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023930.3 ID=Tc02v2_t023930.3|Name=Tc02v2_t023930.3|organism=Theobroma cacao|type=mRNA|length=2514bp
ATGAGACTAACCCCAAGAGAAGTGGAGAAGCTAGGCCTTCATAATGCAGG
GTACCTTGCCCAGAAGCGTCTGGCGCGTGGGCTTAGGCTCAATTATACTG
AAGCTGTTGCTCTCATAGCCACTCAGATTCTGGAGTTTGTTCGTGATGGT
GACAAGAATGTGGCAGAATTGATGGACATTGGGCAACGACTTTTAGGAAG
GAAGCAAGTTCTTCCAGCTGTTCCACATTTGTTGGATTCTGTTCAGGTTG
AAGGGACATTTCCTGATGGAACAAAGTTAATCACTATTCACGGTGCAATT
GCTAGTGAAAATGGAAACCTGGAGCTTGCTTTACGTGGCTCTTTTCTACC
TGTGCCTTCCCCTGAGAAATTTCTTGAAATGGAAGATAAAACAATTCCTG
GTGACATGATCTTCAAAGGTGGGACTATTATGCTTAATCTTGGAAGGAAA
GCAGTAAGTATCAAAGTGACTAACACTGGAGACAGGCCAATTCAGGTTGG
AAGCCATTATCACTTTATAGAGGTGAACCCCTTCTTGGTTTTTGATCGTA
GGAAAGCATATGGCATGCGCTTAAATATACCAGCAGGAACAGCTACAAGA
TTTGAGCCTGGAGAATGTAAAACTGTTGTGCTTGTCAGCATTGGCGGTAG
GAAAGTGATCAGAGGAGGAAATGGTATTGTTGATGGTCCTGTTGATGATG
CCAATGTTGAAATAGTGATGGAAACCATAAAGAGAGAAGGTTACGGGAAT
CTGGAAGATGCAAATGCTAGTGAAGGTGTCACCGGAGAAGATTCTGCTTT
AAGCACAATAATTTCTTGCGAGAAATATGCTAACATGTATGGCCCCACTA
CTGGTGACAAAATTCGGCTAGGTGATACAAACTTGTATGCTGAAATAGAA
AGAGATTTTGCTGTATATGGTGATGAATGTGTCTTTGGGGGTGGAAAAGT
TATAAGAGATGGCATGGGTCAATCATGTGGGCATCCACCAGCTGAATCTT
TAGATATTGCTATAACAAATGCTGTAATCATAGATTACACTGGTATTTTT
AAGGCAGATATTGGTATTAAAAATGGCCTTATTGTTGCACTTGGGAAAGC
AGGCAATCCAGATACCATGGATGGTGTTTTCCCTAATATGATCATTGGTG
TTAACACTGAGGTTATTGCTGGGGAAGGATTGCTTGTAACTGCAGGGGCT
ATAGACTGTCATGTGCACTTCATATGCCCTCAGCTGGTTCATGAAGCAAT
ATCAAGTGGCTACACAACATTAATAGGAGGTGGAACTGGACCTGCTGAAG
GGACACGTGCAACTACTTGTACACCAGCACCATTACAGATGAAATTGATG
CTGCAGTCCACTGATGAGTTCCCTCTAAATTTTGGCTTCACAGGGAAGGG
GAATGGTTCCAAACCTGATGAACTACATGAAATAATCAAGGCTGGAGCTA
TGGGATTGAAGTTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGAC
ACTAGCTTGACTGTTGCAGAACAATTTGATGTACAGGTTAATATACATAC
TGACACCTTGAATGAATCTGGATTTGTGGAACATACAATTGCTGCATTTA
AAGAAAGAACTGTTCATGCTTATCACAGTGAAGGTGCTGGTGGTGGTCAT
GCTCCAGATATTATCAAAGTATGTGGCGTTAAAAATGTCCTCCCCTCATC
AACAAATCCAACACGCCCTTATACTTCCAATACTATAGATGAACATCTTG
ACATGCTGATGGTTTGCCATCACCTGGACAAGGATATTCCAGAAGATGTA
GCTTTTGCTGAATCAAGGATTAGGGCTGAAACAATTGCTGCAGAAGACAT
ATTACATGACATGGGGGCAATCAGCATTATATCTTCTGATTCACAGGCCA
TGGGTCGCATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCCACAAG
ATGAAATCTCAAAGAGGGCCAATTGGTCCTAGCGGATCAGACAGTGACAA
TATAAGGATCAAACGTTATGTTGCAAAATACACCATAAATCCGGCTATTG
CTAATGGGATTGCAGAATTTGTTGGTTCAGTAGAGGTGGGAAAGTTGGCT
GATCTTGTTTTATGGAAGCCATCCTTTTTTGGGGCAAAACCTGAAATGGT
AATCAAAGGTGGTGCAGTTACTTGGGCAAATATGGGAGACCCTAATGCAA
GCATACCAACACCTCAACCGGTTTTGTCAAGGCCGATGTTTGGAGCATTT
GGCAAGGCTGGAAGTGCGAACTCCTTGGCTTTCATCAGCAAGGCTGCTTT
AGATTGTGGAATCAAAGGGTTATATGGACTCAAGAAAAGGGTGGAAGCTG
TTGGCAATACCAGAAGTCTGACCAAGCTTGACATGAAGCTCAATGATGCC
CTCCCAATTATCACAGTGGACCCAGAAACATATACTGTGACAGCTGACGG
TGAGGTCCTCACCTGTGCTGCAGCAACTACTGTTCCACTGTCTCGGAATT
ATTTCCTCTTCTAG
back to top

protein sequence of Tc02v2_p023930.3

>Tc02v2_p023930.3 ID=Tc02v2_p023930.3|Name=Tc02v2_p023930.3|organism=Theobroma cacao|type=polypeptide|length=838bp
MRLTPREVEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQILEFVRDG
DKNVAELMDIGQRLLGRKQVLPAVPHLLDSVQVEGTFPDGTKLITIHGAI
ASENGNLELALRGSFLPVPSPEKFLEMEDKTIPGDMIFKGGTIMLNLGRK
AVSIKVTNTGDRPIQVGSHYHFIEVNPFLVFDRRKAYGMRLNIPAGTATR
FEPGECKTVVLVSIGGRKVIRGGNGIVDGPVDDANVEIVMETIKREGYGN
LEDANASEGVTGEDSALSTIISCEKYANMYGPTTGDKIRLGDTNLYAEIE
RDFAVYGDECVFGGGKVIRDGMGQSCGHPPAESLDIAITNAVIIDYTGIF
KADIGIKNGLIVALGKAGNPDTMDGVFPNMIIGVNTEVIAGEGLLVTAGA
IDCHVHFICPQLVHEAISSGYTTLIGGGTGPAEGTRATTCTPAPLQMKLM
LQSTDEFPLNFGFTGKGNGSKPDELHEIIKAGAMGLKLHEDWGTTPAAID
TSLTVAEQFDVQVNIHTDTLNESGFVEHTIAAFKERTVHAYHSEGAGGGH
APDIIKVCGVKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLDKDIPEDV
AFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTAHK
MKSQRGPIGPSGSDSDNIRIKRYVAKYTINPAIANGIAEFVGSVEVGKLA
DLVLWKPSFFGAKPEMVIKGGAVTWANMGDPNASIPTPQPVLSRPMFGAF
GKAGSANSLAFISKAALDCGIKGLYGLKKRVEAVGNTRSLTKLDMKLNDA
LPIITVDPETYTVTADGEVLTCAAATTVPLSRNYFLF*
back to top