Tc02v2_t023930.1

Overview
NameTc02v2_t023930.1
Unique NameTc02v2_t023930.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2433
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Producturease, transcript variant X3
NoteUrease
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609708
GenbankXM_018116443.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023930Tc02v2_g023930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023930.1Tc02v2_p023930.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto124575auto124575Theobroma cacaoexon
exon-auto124576auto124576Theobroma cacaoexon
exon-auto124577auto124577Theobroma cacaoexon
exon-auto124578auto124578Theobroma cacaoexon
exon-auto124579auto124579Theobroma cacaoexon
exon-auto124580auto124580Theobroma cacaoexon
exon-auto124581auto124581Theobroma cacaoexon
exon-auto124582auto124582Theobroma cacaoexon
exon-auto124583auto124583Theobroma cacaoexon
exon-auto124584auto124584Theobroma cacaoexon
exon-auto124585auto124585Theobroma cacaoexon
exon-auto124586auto124586Theobroma cacaoexon
exon-auto124587auto124587Theobroma cacaoexon
exon-auto124588auto124588Theobroma cacaoexon
exon-auto124589auto124589Theobroma cacaoexon
exon-auto124590auto124590Theobroma cacaoexon
exon-auto124591auto124591Theobroma cacaoexon
exon-auto124592auto124592Theobroma cacaoexon
exon-auto124593auto124593Theobroma cacaoexon
exon-auto124594auto124594Theobroma cacaoexon
exon-auto124595auto124595Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto124596auto124596Theobroma cacaoCDS
CDS-auto124597auto124597Theobroma cacaoCDS
CDS-auto124598auto124598Theobroma cacaoCDS
CDS-auto124599auto124599Theobroma cacaoCDS
CDS-auto124600auto124600Theobroma cacaoCDS
CDS-auto124601auto124601Theobroma cacaoCDS
CDS-auto124602auto124602Theobroma cacaoCDS
CDS-auto124603auto124603Theobroma cacaoCDS
CDS-auto124604auto124604Theobroma cacaoCDS
CDS-auto124605auto124605Theobroma cacaoCDS
CDS-auto124606auto124606Theobroma cacaoCDS
CDS-auto124607auto124607Theobroma cacaoCDS
CDS-auto124608auto124608Theobroma cacaoCDS
CDS-auto124609auto124609Theobroma cacaoCDS
CDS-auto124610auto124610Theobroma cacaoCDS
CDS-auto124611auto124611Theobroma cacaoCDS
CDS-auto124612auto124612Theobroma cacaoCDS
CDS-auto124613auto124613Theobroma cacaoCDS
CDS-auto124614auto124614Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023930.1 ID=Tc02v2_t023930.1|Name=Tc02v2_t023930.1|organism=Theobroma cacao|type=mRNA|length=2433bp
ATGAGACTAACCCCAAGAGAAGTGGAGAAGCTAGGCCTTCATAATGCAGG
GTACCTTGCCCAGAAGCGTCTGGCGCGTGGGCTTAGGCTCAATTATACTG
AAGCTGTTGCTCTCATAGCCACTCAGATTCTGGAGTTTGTTCGTGATGGT
GACAAGAATGTGGCAGAATTGATGGACATTGGGCAACGACTTTTAGGAAG
GAAGCAAGTTCTTCCAGCTGTTCCACATTTGTTGGATTCTGTTCAGGTTG
AAGGGACATTTCCTGATGGAACAAAGTTAATCACTATTCACGGTGCAATT
GCTAGTGAAAATGGAAACCTGGAGCTTGCTTTACGTGGCTCTTTTCTACC
TGTGCCTTCCCCTGAGAAATTTCTTGAAATGGAAGATAAAACAATTCCTG
GTGACATGATCTTCAAAGGTGGGACTATTATGCTTAATCTTGGAAGGAAA
GCAGTAAGTATCAAAGTGACTAACACTGGAGACAGGCCAATTCAGGTTGG
AAGCCATTATCACTTTATAGAGGTGAACCCCTTCTTGGTTTTTGATCGTA
GGAAAGCATATGGCATGCGCTTAAATATACCAGCAGGAACAGCTACAAGA
TTTGAGCCTGGAGAATGTAAAACTGTTGTGCTTGTCAGCATTGGCGGTAG
GAAAGTGATCAGAGGAGGAAATGGTATTGTTGATGGTCCTGTTGATGATG
CCAATGTTGAAATAGTGATGGAAACCATAAAGAGAGAAGGTTACGGGAAT
CTGGAAGATGCAAATGCTAGTGAAGGTGTCACCGGAGAAGATTCTGCTTT
AAGCACAATAATTTCTTGCGAGAAATATGCTAACATGTATGGCCCCACTA
CTGGTGACAAAATTCGGCTAGGTGATACAAACTTGTATGCTGAAATAGAA
AGAGATTTTGCTGTATATGGTGATGAATGTGTCTTTGGGGGTGGAAAAGT
TATAAGAGATGGCATGGGTCAATCATATATTGGTATTAAAAATGGCCTTA
TTGTTGCACTTGGGAAAGCAGGCAATCCAGATACCATGGATGGTGTTTTC
CCTAATATGATCATTGGTGTTAACACTGAGGTTATTGCTGGGGAAGGATT
GCTTGTAACTGCAGGGGCTATAGACTGTCATGTGCACTTCATATGCCCTC
AGCTGGTTCATGAAGCAATATCAAGTGGCTACACAACATTAATAGGAGGT
GGAACTGGACCTGCTGAAGGGACACGTGCAACTACTTGTACACCAGCACC
ATTACAGATGAAATTGATGCTGCAGTCCACTGATGAGTTCCCTCTAAATT
TTGGCTTCACAGGGAAGGGGAATGGTTCCAAACCTGATGAACTACATGAA
ATAATCAAGGCTGGAGCTATGGGATTGAAGTTGCATGAGGACTGGGGAAC
TACTCCTGCTGCAATAGACACTAGCTTGACTGTTGCAGAACAATTTGATG
TACAGGTTAATATACATACTGACACCTTGAATGAATCTGGATTTGTGGAA
CATACAATTGCTGCATTTAAAGAAAGAACTGTTCATGCTTATCACAGTGA
AGGTGCTGGTGGTGGTCATGCTCCAGATATTATCAAAGTATGTGGCGTTA
AAAATGTCCTCCCCTCATCAACAAATCCAACACGCCCTTATACTTCCAAT
ACTATAGATGAACATCTTGACATGCTGATGGTTTGCCATCACCTGGACAA
GGATATTCCAGAAGATGTAGCTTTTGCTGAATCAAGGATTAGGGCTGAAA
CAATTGCTGCAGAAGACATATTACATGACATGGGGGCAATCAGCATTATA
TCTTCTGATTCACAGGCCATGGGTCGCATTGGAGAGGTGATAAGCAGAAC
TTGGCAAACTGCCCACAAGATGAAATCTCAAAGAGGGCCAATTGGTCCTA
GCGGATCAGACAGTGACAATATAAGGATCAAACGTTATGTTGCAAAATAC
ACCATAAATCCGGCTATTGCTAATGGGATTGCAGAATTTGTTGGTTCAGT
AGAGGTGGGAAAGTTGGCTGATCTTGTTTTATGGAAGCCATCCTTTTTTG
GGGCAAAACCTGAAATGGTAATCAAAGGTGGTGCAGTTACTTGGGCAAAT
ATGGGAGACCCTAATGCAAGCATACCAACACCTCAACCGGTTTTGTCAAG
GCCGATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCGAACTCCTTGGCTT
TCATCAGCAAGGCTGCTTTAGATTGTGGAATCAAAGGGTTATATGGACTC
AAGAAAAGGGTGGAAGCTGTTGGCAATACCAGAAGTCTGACCAAGCTTGA
CATGAAGCTCAATGATGCCCTCCCAATTATCACAGTGGACCCAGAAACAT
ATACTGTGACAGCTGACGGTGAGGTCCTCACCTGTGCTGCAGCAACTACT
GTTCCACTGTCTCGGAATTATTTCCTCTTCTAG
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protein sequence of Tc02v2_p023930.1

>Tc02v2_p023930.1 ID=Tc02v2_p023930.1|Name=Tc02v2_p023930.1|organism=Theobroma cacao|type=polypeptide|length=811bp
MRLTPREVEKLGLHNAGYLAQKRLARGLRLNYTEAVALIATQILEFVRDG
DKNVAELMDIGQRLLGRKQVLPAVPHLLDSVQVEGTFPDGTKLITIHGAI
ASENGNLELALRGSFLPVPSPEKFLEMEDKTIPGDMIFKGGTIMLNLGRK
AVSIKVTNTGDRPIQVGSHYHFIEVNPFLVFDRRKAYGMRLNIPAGTATR
FEPGECKTVVLVSIGGRKVIRGGNGIVDGPVDDANVEIVMETIKREGYGN
LEDANASEGVTGEDSALSTIISCEKYANMYGPTTGDKIRLGDTNLYAEIE
RDFAVYGDECVFGGGKVIRDGMGQSYIGIKNGLIVALGKAGNPDTMDGVF
PNMIIGVNTEVIAGEGLLVTAGAIDCHVHFICPQLVHEAISSGYTTLIGG
GTGPAEGTRATTCTPAPLQMKLMLQSTDEFPLNFGFTGKGNGSKPDELHE
IIKAGAMGLKLHEDWGTTPAAIDTSLTVAEQFDVQVNIHTDTLNESGFVE
HTIAAFKERTVHAYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTSN
TIDEHLDMLMVCHHLDKDIPEDVAFAESRIRAETIAAEDILHDMGAISII
SSDSQAMGRIGEVISRTWQTAHKMKSQRGPIGPSGSDSDNIRIKRYVAKY
TINPAIANGIAEFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAVTWAN
MGDPNASIPTPQPVLSRPMFGAFGKAGSANSLAFISKAALDCGIKGLYGL
KKRVEAVGNTRSLTKLDMKLNDALPIITVDPETYTVTADGEVLTCAAATT
VPLSRNYFLF*
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