Tc02v2_t023800.2

Overview
NameTc02v2_t023800.2
Unique NameTc02v2_t023800.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1680
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ProductDNA polymerase alpha subunit B, transcript variant X2
NoteDNA polymerase alpha subunit B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609695
GenbankXM_018115497.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023800Tc02v2_g023800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023800.2Tc02v2_p023800.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto124100auto124100Theobroma cacaoexon
exon-auto124101auto124101Theobroma cacaoexon
exon-auto124102auto124102Theobroma cacaoexon
exon-auto124103auto124103Theobroma cacaoexon
exon-auto124104auto124104Theobroma cacaoexon
exon-auto124105auto124105Theobroma cacaoexon
exon-auto124106auto124106Theobroma cacaoexon
exon-auto124107auto124107Theobroma cacaoexon
exon-auto124108auto124108Theobroma cacaoexon
exon-auto124109auto124109Theobroma cacaoexon
exon-auto124110auto124110Theobroma cacaoexon
exon-auto124111auto124111Theobroma cacaoexon
exon-auto124112auto124112Theobroma cacaoexon
exon-auto124113auto124113Theobroma cacaoexon
exon-auto124114auto124114Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto124115auto124115Theobroma cacaoCDS
CDS-auto124116auto124116Theobroma cacaoCDS
CDS-auto124117auto124117Theobroma cacaoCDS
CDS-auto124118auto124118Theobroma cacaoCDS
CDS-auto124119auto124119Theobroma cacaoCDS
CDS-auto124120auto124120Theobroma cacaoCDS
CDS-auto124121auto124121Theobroma cacaoCDS
CDS-auto124122auto124122Theobroma cacaoCDS
CDS-auto124123auto124123Theobroma cacaoCDS
CDS-auto124124auto124124Theobroma cacaoCDS
CDS-auto124125auto124125Theobroma cacaoCDS
CDS-auto124126auto124126Theobroma cacaoCDS
CDS-auto124127auto124127Theobroma cacaoCDS
CDS-auto124128auto124128Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023800.2 ID=Tc02v2_t023800.2|Name=Tc02v2_t023800.2|organism=Theobroma cacao|type=mRNA|length=1680bp
ATGGATGGGTTTTCGGGGCACCTGCAGAATGAACAAGTAGAGGCGGTTGT
TAAAAAGGAGCCCGATCTGTATATGTACTCTTTTAAAGACGTTGACATGA
TTTTAGATGCTGAAGATGAAGATACAAAAGAAGTTATTCTTAGAACTCCA
ACAGACAAATCTGAAAAACTTCATTCAGATTTATATGACTCTGCACAAAA
AACAAATAGTAACATTTATTCCTCTAGGAGGACACCAAAACAAGTGACAC
CGTTTGGGACACGAAGTAATAAATTTGTGGTGAAATTCAACATCGATAAT
CTTCCTACATCAGAGACTGTGAATGGCATGCATGATCATGAGAATCTCGA
GGATGCTGTTATTAAGAGGATTCAACCTCAAAAAAGATGTTCATTGGTTG
TCCACAGCTCAGGACCTGAACCAGGTTGCAGATTCATGTACGACAGGATT
GAAGACGGGTTCAATGCCCTTGAAAACCGCATTAGAAAGCATGCAGCTGC
ACTTGTTGCATCTGGCCTCTATCAAGAACCAATGGATCCATCAGTTGCTT
CACAGAGGAGCATATTTGCGGTTGGAATGATCTTCTGTGATGACGAGGGT
CATTTAAATGATAAGTCCATCTTGTTGCAAAGCAGTGTTGAGCATTCTGG
AGGGCAACGTGTTCGACTAGAATTAAATAAATTGAGCCACTTTTCTATTT
TTCCAGGGCAGGTGGTAGGCATTGAGGGTCACAACCCTAGTGGGCATTGT
TTGATTGCATCAGAGATCGTAGATTCTGTTCCTTTGACCATTGCTGCTGA
TACGAATCTGCCTCCTGCAAAGAGGCAGGCTTTAAATGAGGAGATTCAGG
CAACAAATCTTTCCTCCACGCCAACAGAGATATCACTGATCATTGCTGCT
GGCCCATTCACTACTACAGACAACTTATTATTTGAGCCTCTGAAAGAACT
GCTCACCTATGCAACGAGAAAGTGTCCACAGTTGCTTATACTGTTAGGAC
CTTTTATCGATTCTGAACATCCACAGATTAAGAAAGGAACTTTTGACCTG
AGTTTTGATGAAATATTTCGATCAGAGGTTCTTAGAATGGTGCAAGATTA
TGTGGAATATATGGGATCTGATGCACGCGTGATTCTTATTCCATCTATTC
GGGATGCTAATCACGACTTTGTTTTCCCTCAGCCTCCTTTTGATCTTGAT
CTACACAATCTTAATCAGATAACCAGTCTCACAAATCCAGGGATTTTTGA
GGCAGATGAGGTCAAGATTGGTTGCTGCACTGTAGATATTCTCAAACATC
TTAGTGGAGAGGAGATATCACGACATTCAATGGATGGAACGCCTAGTGAT
CGCTTGAGTAGACTTGCCAGCCATATTCTTAGCCAGCGCAGCTTTTATCC
GCTGTATCCACCAGCAGAAGGTGTCCCATTGGATTCCTCACTTGCTCCTG
AAGCTCTTCATATCCCTTCAGTTCCAGATCTTCTTATCTTACCTTCAGAC
ATCAAATACTTTGTCAAGGTGTTATCTCTGGGGGGAACAAGTGAAGGGAA
AGAACAAACGAAGAAATGCATTTGTATTAACCCAGGAAGACTGGCCAAGG
GAGCAGGCGGAGGCACCTTTGTAGAGCTCAAATACCAAGGGAGTCCTGAT
AAGATGAATGCTTCAATTATTGGTATATGA
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protein sequence of Tc02v2_p023800.2

>Tc02v2_p023800.2 ID=Tc02v2_p023800.2|Name=Tc02v2_p023800.2|organism=Theobroma cacao|type=polypeptide|length=560bp
MDGFSGHLQNEQVEAVVKKEPDLYMYSFKDVDMILDAEDEDTKEVILRTP
TDKSEKLHSDLYDSAQKTNSNIYSSRRTPKQVTPFGTRSNKFVVKFNIDN
LPTSETVNGMHDHENLEDAVIKRIQPQKRCSLVVHSSGPEPGCRFMYDRI
EDGFNALENRIRKHAAALVASGLYQEPMDPSVASQRSIFAVGMIFCDDEG
HLNDKSILLQSSVEHSGGQRVRLELNKLSHFSIFPGQVVGIEGHNPSGHC
LIASEIVDSVPLTIAADTNLPPAKRQALNEEIQATNLSSTPTEISLIIAA
GPFTTTDNLLFEPLKELLTYATRKCPQLLILLGPFIDSEHPQIKKGTFDL
SFDEIFRSEVLRMVQDYVEYMGSDARVILIPSIRDANHDFVFPQPPFDLD
LHNLNQITSLTNPGIFEADEVKIGCCTVDILKHLSGEEISRHSMDGTPSD
RLSRLASHILSQRSFYPLYPPAEGVPLDSSLAPEALHIPSVPDLLILPSD
IKYFVKVLSLGGTSEGKEQTKKCICINPGRLAKGAGGGTFVELKYQGSPD
KMNASIIGI*
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