Tc02v2_t023760.1

Overview
NameTc02v2_t023760.1
Unique NameTc02v2_t023760.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1029
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 46 ESTs, 84 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productglyceraldehyde-3-phosphate dehydrogenase, cytosolic
NoteGlyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609691
GenbankXM_018114458.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023760Tc02v2_g023760Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023760.1Tc02v2_p023760.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto124008auto124008Theobroma cacaoexon
exon-auto124009auto124009Theobroma cacaoexon
exon-auto124010auto124010Theobroma cacaoexon
exon-auto124011auto124011Theobroma cacaoexon
exon-auto124012auto124012Theobroma cacaoexon
exon-auto124013auto124013Theobroma cacaoexon
exon-auto124014auto124014Theobroma cacaoexon
exon-auto124015auto124015Theobroma cacaoexon
exon-auto124016auto124016Theobroma cacaoexon
exon-auto124017auto124017Theobroma cacaoexon
exon-auto124018auto124018Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto124019auto124019Theobroma cacaoCDS
CDS-auto124020auto124020Theobroma cacaoCDS
CDS-auto124021auto124021Theobroma cacaoCDS
CDS-auto124022auto124022Theobroma cacaoCDS
CDS-auto124023auto124023Theobroma cacaoCDS
CDS-auto124024auto124024Theobroma cacaoCDS
CDS-auto124025auto124025Theobroma cacaoCDS
CDS-auto124026auto124026Theobroma cacaoCDS
CDS-auto124027auto124027Theobroma cacaoCDS
CDS-auto124028auto124028Theobroma cacaoCDS
CDS-auto124029auto124029Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023760.1 ID=Tc02v2_t023760.1|Name=Tc02v2_t023760.1|organism=Theobroma cacao|type=mRNA|length=1029bp
ATGGCCTCAGACAAGAAGATTAAGATCGGGATTAACGGATTTGGAAGAAT
CGGACGTTTGGTTGCCAGAGTCGCTCTCCAGAGGAACGACGTTGAACTCG
TTGCCGTTAACGATCCCTTCATTACTACTGATTACATGACGTACATGTTC
AAATACGACAGCGTTCACGGTCAATGGAAACACCATAATGTTAAGGTCAA
AGACTCTAAAACCCTTCTCTTCGGCGAGAAACCCGTCACTGTTTTCGGAA
TCAGGAATCCTGAGGAGATTCCATGGGCCGAGACTGGAGCTGAGTTCGTT
GTTGAGTCAACTGGAGTGTTCACTGACAAGGATAAGGCTGCTGCTCACTT
GAAAGGTGGTGCTAAGAAGGTAGTGATCTCTGCTCCAAGCAAAGATGCGC
CCATGTTTGTAGTGGGTGTGAACGAGAAGGAATACAAGCCAGAGCTTGAC
ATTGTTTCCAATGCTAGCTGCACCACCAACTGTCTTGCTCCCCTTGCCAA
GGTTATCAATGACAGATTTGGAATTGTAGAGGGTCTCATGACCACCGTTC
ACTCAATTACTGCCACACAAAAGACTGTTGATGGACCATCAATGAAGGAC
TGGAGAGGTGGCAGAGCTGCTTCCTTCAACATCATTCCAAGCAGCACTGG
TGCTGCCAAGGCTGTTGGAAAAGTTCTACCTGCCCTCAATGGTAAATTGA
CTGGAATGTCCTTCCGAGTTCCCACCGTCGATGTATCAGTTGTGGACCTA
ACCGTTAGGCTTGCGAAGTCTGCATCTTATGACGAGATCAAAGCTGCTAT
CAGGGAGGAGTCTGAGGGCAAGCTTAAGGGCATTTTAGGTTACATTGAAG
AAGATGTTGTCTCCACAGACTTTGTTGGTGACAGCAGGTCGAGCATATTT
GATGCCAAGGCTGGTATTGCTCTGAATGGGAACTTCGTGAAACTTGTGTC
CTGGTATGACAATGAATGGGGTTACAGTTCTCGTGTGATTGACTTGATTG
TTCACATGGCATCCACCCAAGCTTGTTGA
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protein sequence of Tc02v2_p023760.1

>Tc02v2_p023760.1 ID=Tc02v2_p023760.1|Name=Tc02v2_p023760.1|organism=Theobroma cacao|type=polypeptide|length=343bp
MASDKKIKIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMF
KYDSVHGQWKHHNVKVKDSKTLLFGEKPVTVFGIRNPEEIPWAETGAEFV
VESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELD
IVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKD
WRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDL
TVRLAKSASYDEIKAAIREESEGKLKGILGYIEEDVVSTDFVGDSRSSIF
DAKAGIALNGNFVKLVSWYDNEWGYSSRVIDLIVHMASTQAC*
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