Tc02v2_t023440.1

Overview
NameTc02v2_t023440.1
Unique NameTc02v2_t023440.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1746
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Producttwo-component response regulator ARR11, transcript variant X1
NotePutative Two-component response regulator ORR26
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609658
GenbankXM_007044887.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g023440Tc02v2_g023440Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p023440.1Tc02v2_p023440.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto123634auto123634Theobroma cacaoexon
exon-auto123635auto123635Theobroma cacaoexon
exon-auto123636auto123636Theobroma cacaoexon
exon-auto123637auto123637Theobroma cacaoexon
exon-auto123638auto123638Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto123639auto123639Theobroma cacaoCDS
CDS-auto123640auto123640Theobroma cacaoCDS
CDS-auto123641auto123641Theobroma cacaoCDS
CDS-auto123642auto123642Theobroma cacaoCDS
CDS-auto123643auto123643Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t023440.1 ID=Tc02v2_t023440.1|Name=Tc02v2_t023440.1|organism=Theobroma cacao|type=mRNA|length=1746bp
ATGGTCGAAAGTGGCTTCTCTTCTCCTCGACACGACGCTTTTCCTGCCGG
CCTCCGTGTTCTCGTCGTCGATGACGATCCTACATGGTTGAAGATTCTTG
AAAAGATGCTCAAAAAGTGTTCCTATGAAGTAACTACGTGTGGTCTTGCA
CGAGATGCTCTGAACTTGCTTCGTGAAAGGAAGGATGGCTATGACATTGT
AATCAGTGATGTTAACATGCCTGACATGGATGGGTTTAAACTTCTAGAAC
ATGTTGGACTGGAAATGGACTTACCTGTCATCATGATGTCCGTTGATGGG
GAAACAAGCCGAGTCATGAAAGGCGTCCAACATGGCGCTTGTGATTACCT
TCTAAAGCCTATAAGAATGAAAGAGCTTCGCAATATATGGCAGCATGTGT
TCAGAAAAAAGATACATGAAGTGAGAGACATTGAAAGTCTGGAAGGCAAT
GAAGGTCTTCAGATGACAAGAAGTGGCTCAGATCTGGTTGATGATGGGCA
CTTGCTTAGTGGAGAAGATATGAACTCTGCTAGAAAAAGAAAAGATGCTG
AAAACAAGCATGATGATAGAGACCTCAGTGATCCTTCTTCTACAAAGAAA
GCTAGAGTTGTTTGGACTGTAGACCTTCACCAAAAATTTGTCAAAGCCGT
AAATCAGATTGGATTTGATAAAGTTGGTCCTAAAAAGATACTTGACTTGA
TGAATGTACCATGGTTGACAAGAGAAAATGTTGCCAGCCACTTGCAGAAG
TACCGCCTCTATTTGAGTCGGTTGCAGAAAGACAGTGATGTCAAAAATTC
ATTTGTTGGAATGAAGCATTCAGATCCACCTTCTAAAGATTCTACTGACT
GTTTTGGTATCCATAGCTCAATGAGCGTGATACAAGATGATGTTTCAAAT
GGCACCTATAATTTTTCTGTTAATAACTCACTTGTTCAGAATGTGGATCT
CAATCATGAAGGTGACAAAAAAGGAATTACTTCAGCGCCTGTGGCAGAGC
CCAAAGGAGCTTTGTCTATAGATATTCCTGATCCCCATAAAGCCCAGAGT
TCACAGATAAGCTTTGATCATTCCCTTGGATCAGTTGATTCAGGTCTTAA
GTTTGCATTATTCAATTCTACCAACCAGACACGGTACTCCTGGAGTGAAA
TTCCTGAAATTCAGTTCAAACAAGAGTGTGAACCATTGCAATTAGAGAAT
GGCTTCAGCCAACTACCACTGCCTGGTTCACAGCATCAAGTCCAGACCGA
ATATTTACAACCTGCTGTATCCATTAGCTCTGGACCTTCCATAACTGAAA
AAGAGGTTAGTAGCAGGCCTTTGTATGATGAGTATAGAAGCAATCATGTC
AAACATTTAAGTCCAACAGAAGCAGTTGACTTGTTTCCTGTTCCAAGCAG
AAACCAAACGCTAAATAATCAAGTTTTCAACCCCATTTCTGCTACTACAT
CAAGCATGAAAAATCAGGGCATAAGTCTGAATGACTTGGAATTTGCACAG
AGAAACCTGAATGGGGGAGTAGGAGTACCTATTGCATCTTTAAGTGAGGA
CTTACAGTTCTGTTGGCTTCAAGGTGAGTGTTATGCTATGAATATTGGTC
TCCAGGATTTTGAGTGTATTGAGTATAACGATCCAGCACCCATTGCTGAA
ATTCCATTCCTCTTGTATGATGCACCAAGGTTTGACCACGAGCATCTGTT
TGACCCTACTGAATATGCTGCAATAGATCAAGGGTTGTTTGCTTAG
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protein sequence of Tc02v2_p023440.1

>Tc02v2_p023440.1 ID=Tc02v2_p023440.1|Name=Tc02v2_p023440.1|organism=Theobroma cacao|type=polypeptide|length=582bp
MVESGFSSPRHDAFPAGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLA
RDALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDG
ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIESLEGN
EGLQMTRSGSDLVDDGHLLSGEDMNSARKRKDAENKHDDRDLSDPSSTKK
ARVVWTVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQK
YRLYLSRLQKDSDVKNSFVGMKHSDPPSKDSTDCFGIHSSMSVIQDDVSN
GTYNFSVNNSLVQNVDLNHEGDKKGITSAPVAEPKGALSIDIPDPHKAQS
SQISFDHSLGSVDSGLKFALFNSTNQTRYSWSEIPEIQFKQECEPLQLEN
GFSQLPLPGSQHQVQTEYLQPAVSISSGPSITEKEVSSRPLYDEYRSNHV
KHLSPTEAVDLFPVPSRNQTLNNQVFNPISATTSSMKNQGISLNDLEFAQ
RNLNGGVGVPIASLSEDLQFCWLQGECYAMNIGLQDFECIEYNDPAPIAE
IPFLLYDAPRFDHEHLFDPTEYAAIDQGLFA*
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