Tc02v2_t022300.1

Overview
NameTc02v2_t022300.1
Unique NameTc02v2_t022300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1515
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Producthigh affinity nitrate transporter 2.5
NoteHigh affinity nitrate transporter 2.5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609520
GenbankXM_007044664.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g022300Tc02v2_g022300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p022300.1Tc02v2_p022300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto121248auto121248Theobroma cacaoexon
exon-auto121249auto121249Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto121250auto121250Theobroma cacaoCDS
CDS-auto121251auto121251Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t022300.1 ID=Tc02v2_t022300.1|Name=Tc02v2_t022300.1|organism=Theobroma cacao|type=mRNA|length=1515bp
ATGGAGGTGCAGGGCACTGTACCGGAATCTCACCCTCCGAAATTCACTCT
CCCGGTGGACACAGAACACAAGGCAACAGAGTTTAGGCTATTTTCAGTGG
CAGCACCTCACATGAGAGCATTTCATCTCGCATGGGTTTCCTTCTTCTCT
TGTTTTGTATCCACGTTTGCGGCTCCTCCACTCCTTCCTATTATACGCGA
CAACCTCAACCTCACATCAACTGACATTGGCAATGCAGGGATTGCTGCTG
TCTCTGGTGCGGTCTTTGCCAGACTTGCCATGGGGACCGCTTGTGACCTG
TTCGGTCCCCGTCTTGCATCTGCCTCATTAATCCTCCTAACCACACCCGC
AGTCTACTTCACTTCCATTGCTTCTTCACCTGTTTCTTTCCTGCTTGTTC
GCTTCTTTACAGGCTTCTCAATTGCTACTTTTGTGTCAACTCAATTCTGG
ATGAGCTCCATGTTCTCTGCTCCTGTTGTTGGTACTGCTAATGGTGTTGC
AGGTGGCTGGGGCAACCTTGGAGGTGGCGCAACCCAGCTGATCATGCCTA
TAGTGTTTGGCCTTATCCGTCACACTGGAGCAGATAACTTTACAGCTTGG
AGAATTGCATTTTTCATACCTGCCTTGTTTCAAACGTTATCAGCATTTGC
AGTTCTGATTTTTGGCCAAGACTTACCGGACGGGAACTTTAGGGGGCTTC
AGAAGTCGGGGGACAAACCAAAAGATAAATTCTCACTTGTTTTCTATCAT
GGCATCACAAATTACAGAGGATGGATTCTGGCATTGACTTATGGATATTG
TTTTGGGGTTGAGCTGGCAGTGGATAACATAATTGCCGAGTACTTCTATG
ACAGATTCAATCTTAAACTCCACACTGCAGGAATGATTGCAGCAAGTTTT
GGATTAGCAAACGTGATTTCTCGACCTGGAGGAGGGATAATATCTGATGT
AGTGGCAAAGAGGTTTGGGATGAGAGGTAGGCTATGGACTTTGTGGGTGG
TGCAGACCTTAGGAGGCGTGTTCTGTATCATTCTTGGGCAGGTGGGATCT
TTAAGTGCATCCATTGCTGTGATGATTGCTTTCTCTTTGTTTGTTCAAGC
TGCATGTGGGCTCACATTTGGAGTGGTTCCCTTCATCTCCCGAAGGTCAT
TAGGGGTAATATCAGGCATGACAGGCGGTGGAGGAAATGTGGGTGCCGTT
TTGACTCAATTAATTTTTTTCAAAGGATCCAAATATTCAAAAGAAACGGG
GATTACTCTTATGGGCGTCATGATCATATGCTGCACCCTTCCTATATGCT
TGATATACTTCCCCCAGTGGGGTGGAATGTTTTGCGGTCCATCAGACAAG
CAGACGGAAGAGGACTACTACATGTCTGAATGGAGTTCAACAGAGAAGGA
GAAAGGATTACATCATGCGAGCTTGAAATTTGCTGATAACAGTAGAAGTG
AAAAAGGCCGAAGAGTAAAGGCTGCAGCCTTGCCTACAGATGAATCATCA
CCTACACAAGTTTAA
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protein sequence of Tc02v2_p022300.1

>Tc02v2_p022300.1 ID=Tc02v2_p022300.1|Name=Tc02v2_p022300.1|organism=Theobroma cacao|type=polypeptide|length=505bp
MEVQGTVPESHPPKFTLPVDTEHKATEFRLFSVAAPHMRAFHLAWVSFFS
CFVSTFAAPPLLPIIRDNLNLTSTDIGNAGIAAVSGAVFARLAMGTACDL
FGPRLASASLILLTTPAVYFTSIASSPVSFLLVRFFTGFSIATFVSTQFW
MSSMFSAPVVGTANGVAGGWGNLGGGATQLIMPIVFGLIRHTGADNFTAW
RIAFFIPALFQTLSAFAVLIFGQDLPDGNFRGLQKSGDKPKDKFSLVFYH
GITNYRGWILALTYGYCFGVELAVDNIIAEYFYDRFNLKLHTAGMIAASF
GLANVISRPGGGIISDVVAKRFGMRGRLWTLWVVQTLGGVFCIILGQVGS
LSASIAVMIAFSLFVQAACGLTFGVVPFISRRSLGVISGMTGGGGNVGAV
LTQLIFFKGSKYSKETGITLMGVMIICCTLPICLIYFPQWGGMFCGPSDK
QTEEDYYMSEWSSTEKEKGLHHASLKFADNSRSEKGRRVKAAALPTDESS
PTQV*
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