Tc02v2_t022280.1

Overview
NameTc02v2_t022280.1
Unique NameTc02v2_t022280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1422
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productpolygalacturonase At1g48100
NotePutative Polygalacturonase At1g48100
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609518
GenbankXM_018115112.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g022280Tc02v2_g022280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p022280.1Tc02v2_p022280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto121222auto121222Theobroma cacaoexon
exon-auto121223auto121223Theobroma cacaoexon
exon-auto121224auto121224Theobroma cacaoexon
exon-auto121225auto121225Theobroma cacaoexon
exon-auto121226auto121226Theobroma cacaoexon
exon-auto121227auto121227Theobroma cacaoexon
exon-auto121228auto121228Theobroma cacaoexon
exon-auto121229auto121229Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto121230auto121230Theobroma cacaoCDS
CDS-auto121231auto121231Theobroma cacaoCDS
CDS-auto121232auto121232Theobroma cacaoCDS
CDS-auto121233auto121233Theobroma cacaoCDS
CDS-auto121234auto121234Theobroma cacaoCDS
CDS-auto121235auto121235Theobroma cacaoCDS
CDS-auto121236auto121236Theobroma cacaoCDS
CDS-auto121237auto121237Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t022280.1 ID=Tc02v2_t022280.1|Name=Tc02v2_t022280.1|organism=Theobroma cacao|type=mRNA|length=1422bp
ATGAGGAGAGATAAGAGTTTATATCTTCTAGCACTTGTGGCTATCATGTT
TCTTGTATTCATCACATCTTCTATAACCTCAGTCGAGGGAAGAAAGCATA
ATGTCAATAAAGGCAAGCCTCATAAGCATCAAAAAGATAAGAACCACAAA
GGTAACGGCGCTCCACACTCAAGCCCTGCACCAGCGCCTCTTCCTGGTTA
CGACTATTATCCAACTGGTTCGAACATTTTTGATGTTTTGTCTTTTGGAG
CCAAGGGTGACGGAGTTTCTGATGATTCAAAGGCACTTCTAGCAGCATGG
AAAGCTGCCTGCAAGGTGCCTGGGGCTACAGTAGAAATTCCATCAGAATT
CAAATTCCTGGTCAAGCCCTTAACTCTTCAAGGTCCATGCATGCCTAACC
TTGTTTTTCAGATAGATGGAGCTCTGTTAGCCCCCCCAAAAGTGGGTTCA
TGGCCAAAGTCCAGTTTGTTTCAATGGATAAACTTCAAATGGATCCATAA
TTTTACTATTCAAGGTACTGGAGTTGTTGATGGTCAAGGCTCTCAGTGGT
GGACTCCATCTGATCAGATTTATTATATTCAGAAAAAATTCAAACACATT
CCAAATTGGAAACCAACCGCTTTAAGATTCTACTCAAGCTACAATGTGAC
AGTTCGCGACATCCAAATCATAAACAGCCCTCAATGCCACCTAAAATTTG
ATAGCTCAGGTGGTATCAAAGTAAACAACCTTACAATTTCTTCTCCAGAG
AGTAGTCCAAATACCGATGGTATTCATCTGCAAAACACTCGAGATGTAGA
AATTCTGTATTCCAATATTGGCTGTGGAGATGACTGTGTATCCATTCAGA
CAGGTTGCTCGAACGTTCATATTCACCATGTTAATTGCGGCCCTGGTCAT
GGGATTAGTTTGGGAGGGCTGGGGAAAGACAAGAGTGTTGCATGTGTCTC
GGATATAGTTGTTGAAAAGATCTCACTGCTGAATACACTAGCTGGAGTTA
GAATCAAGACTTGGCAGGGTGGTATGGGATCTGTCAAGAACGTCTCATTC
TCCAATATTCAAGTCTCTGACGTAAAGGTTCCTATAATAATTGACCAGTA
CTACTGTGACAAGAATGTTTGCAAGAACCAAACAGGAGCCGTGGCAATAT
CTGGTGTTACATATGATCAAATAATCGGAACTTATTCGGTACAACCGATT
CATCTTGCTTGTAGCAATGACATCCCATGCACTGACGTTGATCTTATCGA
TATTCAATTAAAACCCTCCCTTAGATATCGAGGTTTCCATCAAGCATTAT
GTTGGAACTCTTATGGGAAATCACAGGCCCCTTTGCTTCCTTCAAACATA
GACTCTTGCCTAAGAAGGGATGGTGGTTCAGTCAAGAGAATAGCTAGATC
TCGCGAGCATGTTTGTTTTTAG
back to top

protein sequence of Tc02v2_p022280.1

>Tc02v2_p022280.1 ID=Tc02v2_p022280.1|Name=Tc02v2_p022280.1|organism=Theobroma cacao|type=polypeptide|length=474bp
MRRDKSLYLLALVAIMFLVFITSSITSVEGRKHNVNKGKPHKHQKDKNHK
GNGAPHSSPAPAPLPGYDYYPTGSNIFDVLSFGAKGDGVSDDSKALLAAW
KAACKVPGATVEIPSEFKFLVKPLTLQGPCMPNLVFQIDGALLAPPKVGS
WPKSSLFQWINFKWIHNFTIQGTGVVDGQGSQWWTPSDQIYYIQKKFKHI
PNWKPTALRFYSSYNVTVRDIQIINSPQCHLKFDSSGGIKVNNLTISSPE
SSPNTDGIHLQNTRDVEILYSNIGCGDDCVSIQTGCSNVHIHHVNCGPGH
GISLGGLGKDKSVACVSDIVVEKISLLNTLAGVRIKTWQGGMGSVKNVSF
SNIQVSDVKVPIIIDQYYCDKNVCKNQTGAVAISGVTYDQIIGTYSVQPI
HLACSNDIPCTDVDLIDIQLKPSLRYRGFHQALCWNSYGKSQAPLLPSNI
DSCLRRDGGSVKRIARSREHVCF*
back to top