Tc02v2_t022050.2

Overview
NameTc02v2_t022050.2
Unique NameTc02v2_t022050.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1323
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productprobable polygalacturonase At1g80170, transcript variant X2
NotePutative Probable polygalacturonase At1g80170
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609492
GenbankXM_018116618.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g022050Tc02v2_g022050Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p022050.2Tc02v2_p022050.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto120712auto120712Theobroma cacaoexon
exon-auto120713auto120713Theobroma cacaoexon
exon-auto120714auto120714Theobroma cacaoexon
exon-auto120715auto120715Theobroma cacaoexon
exon-auto120716auto120716Theobroma cacaoexon
exon-auto120717auto120717Theobroma cacaoexon
exon-auto120718auto120718Theobroma cacaoexon
exon-auto120719auto120719Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto120720auto120720Theobroma cacaoCDS
CDS-auto120721auto120721Theobroma cacaoCDS
CDS-auto120722auto120722Theobroma cacaoCDS
CDS-auto120723auto120723Theobroma cacaoCDS
CDS-auto120724auto120724Theobroma cacaoCDS
CDS-auto120725auto120725Theobroma cacaoCDS
CDS-auto120726auto120726Theobroma cacaoCDS
CDS-auto120727auto120727Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t022050.2 ID=Tc02v2_t022050.2|Name=Tc02v2_t022050.2|organism=Theobroma cacao|type=mRNA|length=1323bp
ATGTCTTATTGGATTTATACAAATCAATCAATCTTCCAAACAGAAAAAAA
AAAGGAACAAATCATGGATAAATTATTCCTGGTTTCCTTCCTTGGTTTGC
TGATAGCAGCATGTGGAGTAGCAGGAAACATGCTAGATGACAACTTTAAC
CTACTTAGAGAGGCTGAAGACCTGGACATAGCAGAAGATGATGTGGAACT
TTTTGAGATCCCATCTTGGACAAGTGAACGTGGTGGCAAGGTTCTTGTGA
ATGTGGATAGCTTTGGTGCAGTTGGAGATGGAGTTTCTGATGACACCCAG
ATCGATGGAACAATAGTAGCACCAGATGAACCTAAGAACTGGGACCCAGA
TCTTGCACGACTCTGGCTTGATTTTTCTAAGCTGCACGGAGTGGCGTTCC
AAGGAAACGGAGTTATTGATGGCTCTGGCGGCAAATGGTGGGCATCTTCT
TGCAAAAAGAACAAGTCAAATCCTTGCAGAGGGGCACCAACAGCACTGAC
TATAGATTCAAGCTCATCTATTAAGGTAAAAGGCCTTACCATTCAGAACA
GCCAACAGATGAATTTCGTCATTTCCAAGTCTGAATCTGTACGAGTATAT
GAAGTACGAGTCTCATCTCCAGGAGACAGTCCAAACACTGATGGGATCCA
CATAACTGGATCAACTAATGTTGTTCTTCAAGACTGCAAAATAGGAACAG
GGGATGATTGCATCTCAATTGTCAATGCTTCATCTGCTATCAAGATGAAG
AGAATATATTGTGGACCAGGACATGGAGTCAGCATTGGAAGCCTTGGGAA
GGATAACTCCATGGGCATTGTTACGAAGGTGGTCTTGGATACAGCATTTC
TAAGGGAGACTAGCAATGGGGTCAGGATTAAAACTTGGCAGGGTGGTTCC
GGTTATGTTCGTGGGGTGCGTTTCGAAAATGTGAGGATGGAAGATGTTGC
CAACCCCATCATTATTGATCAATTCTACTGCGATTCACCAACAACCTGCC
AAAACCAGACATCAGCAGTGCAAATAAGCCAGATTATGTACCGAAACATT
AGTGGGATAACAAAAAGCACAGAAGCAATGAAGTTTGCCTGCAGTGATAC
TGTTCCCTGCCTCAATATAGTGCTGAGCAATATAAACTTAGAGAAAAAGG
ATGGCACGGTGGAGACCTACTGCAACTCCGCCCAAGGCTTTGGCTATGGT
GTCGTGCATCCTTCAGCTGACTGCCTAAGTTCCCACGACAAAGGCTCTAT
TCTTATTGATCAGAAAGAAAATGCGGAGCTTGTTGAACCCACCAGAGATC
ATATTGCTCACACAGAACTCTAA
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protein sequence of Tc02v2_p022050.2

>Tc02v2_p022050.2 ID=Tc02v2_p022050.2|Name=Tc02v2_p022050.2|organism=Theobroma cacao|type=polypeptide|length=441bp
MSYWIYTNQSIFQTEKKKEQIMDKLFLVSFLGLLIAACGVAGNMLDDNFN
LLREAEDLDIAEDDVELFEIPSWTSERGGKVLVNVDSFGAVGDGVSDDTQ
IDGTIVAPDEPKNWDPDLARLWLDFSKLHGVAFQGNGVIDGSGGKWWASS
CKKNKSNPCRGAPTALTIDSSSSIKVKGLTIQNSQQMNFVISKSESVRVY
EVRVSSPGDSPNTDGIHITGSTNVVLQDCKIGTGDDCISIVNASSAIKMK
RIYCGPGHGVSIGSLGKDNSMGIVTKVVLDTAFLRETSNGVRIKTWQGGS
GYVRGVRFENVRMEDVANPIIIDQFYCDSPTTCQNQTSAVQISQIMYRNI
SGITKSTEAMKFACSDTVPCLNIVLSNINLEKKDGTVETYCNSAQGFGYG
VVHPSADCLSSHDKGSILIDQKENAELVEPTRDHIAHTEL*
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