Tc02v2_t021840.1

Overview
NameTc02v2_t021840.1
Unique NameTc02v2_t021840.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length840
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Productcarbonic anhydrase 2, transcript variant X2
NoteCarbonic anhydrase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609465
GenbankXM_018115967.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g021840Tc02v2_g021840Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p021840.1Tc02v2_p021840.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto120063auto120063Theobroma cacaoexon
exon-auto120064auto120064Theobroma cacaoexon
exon-auto120065auto120065Theobroma cacaoexon
exon-auto120066auto120066Theobroma cacaoexon
exon-auto120067auto120067Theobroma cacaoexon
exon-auto120068auto120068Theobroma cacaoexon
exon-auto120069auto120069Theobroma cacaoexon
exon-auto120070auto120070Theobroma cacaoexon
exon-auto120071auto120071Theobroma cacaoexon
exon-auto120072auto120072Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto120073auto120073Theobroma cacaoCDS
CDS-auto120074auto120074Theobroma cacaoCDS
CDS-auto120075auto120075Theobroma cacaoCDS
CDS-auto120076auto120076Theobroma cacaoCDS
CDS-auto120077auto120077Theobroma cacaoCDS
CDS-auto120078auto120078Theobroma cacaoCDS
CDS-auto120079auto120079Theobroma cacaoCDS
CDS-auto120080auto120080Theobroma cacaoCDS
CDS-auto120081auto120081Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t021840.1 ID=Tc02v2_t021840.1|Name=Tc02v2_t021840.1|organism=Theobroma cacao|type=mRNA|length=840bp
ATGGCTGGAAGATTTAGTAAGTGTATGCTGCTATGTTGTTCGGCAAAGGT
CTCGAAAGAAGAAGACATGGGAAGCGAGTCATACGAGGAGGCGATTGCAG
CTTTGTCGAAGCTTCTCAGTGACAAAGCTGATCTCCAAAGCGTCGCCGCC
GCAAAAATCATGCAGATAACGGCCGAGTTAGAGGCAGCTGCCGACCCCAA
CCAGTTCGACCCGGTCAAGCGGATCGAAACCGGTTTCCTTCACTTCAAGA
AGGAGAAATATGAGAAAAATCCTGATCTGTACGGTGAGCTTGCCAAAGGC
CAAAGCCCCAAGTTTTTGGTATTTGCTTGCTCCGACTCTCGAGTCTGCCC
CTCTCACATCCTGGATTTCCAACCAGGGGAGGCTTTTATGGTCCGAAACA
TTGCCAACATGGTTCCACCGTATGACAAGACAAAATACTCCGGAGTTGGT
GCGGCCATTGAATATGCAGTCCTGCATCTGAAGGTGGAGAATATTGTGGT
TATTGGACACAGCTGCTGTGGAGGTATCAAAGGGCTCATGTCTATCCCAG
ATGATGGGACCACTGCTAGTGATTTCATTGAACAATGGGTTAGCATCTGT
GCACCCGCAAAGACTAAGGTGAAATCAGAATGTAATGAGCTAAGTTTCTC
GGAGCAATGCACCAACTGCGAGAAGGAAGCTGTGAATGTATCTCTGGGCA
ACCTGTTGACATATCCATTTGTGAGAGAGGCTGTGGTGAAGAAAAGCCTT
GTTTTGAAGGGCGCACATTATGATTTTGTGGATGGAAAGTTTGATCTCTG
GAATCTCGACTTCAACATTACACCCACTTTAGCTGTATGA
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protein sequence of Tc02v2_p021840.1

>Tc02v2_p021840.1 ID=Tc02v2_p021840.1|Name=Tc02v2_p021840.1|organism=Theobroma cacao|type=polypeptide|length=280bp
MAGRFSKCMLLCCSAKVSKEEDMGSESYEEAIAALSKLLSDKADLQSVAA
AKIMQITAELEAAADPNQFDPVKRIETGFLHFKKEKYEKNPDLYGELAKG
QSPKFLVFACSDSRVCPSHILDFQPGEAFMVRNIANMVPPYDKTKYSGVG
AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASDFIEQWVSIC
APAKTKVKSECNELSFSEQCTNCEKEAVNVSLGNLLTYPFVREAVVKKSL
VLKGAHYDFVDGKFDLWNLDFNITPTLAV*
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