Tc02v2_t019950.1

Overview
NameTc02v2_t019950.1
Unique NameTc02v2_t019950.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length984
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductIST1 homolog
NoteRegulator of Vps4 activity in the MVB pathway protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609235
GenbankXM_007044260.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g019950Tc02v2_g019950Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p019950.1Tc02v2_p019950.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto117048auto117048Theobroma cacaoexon
exon-auto117049auto117049Theobroma cacaoexon
exon-auto117050auto117050Theobroma cacaoexon
exon-auto117051auto117051Theobroma cacaoexon
exon-auto117052auto117052Theobroma cacaoexon
exon-auto117053auto117053Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto117054auto117054Theobroma cacaoCDS
CDS-auto117055auto117055Theobroma cacaoCDS
CDS-auto117056auto117056Theobroma cacaoCDS
CDS-auto117057auto117057Theobroma cacaoCDS
CDS-auto117058auto117058Theobroma cacaoCDS
CDS-auto117059auto117059Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t019950.1 ID=Tc02v2_t019950.1|Name=Tc02v2_t019950.1|organism=Theobroma cacao|type=mRNA|length=984bp
ATGTCTCTCTTAAACCAATTGTTTAATAGAGGTGTTTTTGGTGCAAAATG
TAAAACATGCTTGAGCTTGGCAATCTCGCGCATTAAATTGCTGCAAAATA
AGAGGGATTTGCAGCTCAAACATATGAGAAAAGAGATAGCCCAATTTTTG
CAGGCTGGCCAAGAACCAATTGCTCGAATTCGGGTGGAACATATAATCAG
AGAGCAGAATATATGGGCTGCATATGAGATACTGGAGCTTTTCTGTGAGT
TTGTTCTTGCACGCGTTCCTATTCTTGAAAGCCAGAAGGAGTGTCCGTCA
GAATTGCGAGAAGCTGTGGCAAGCATAATTTTTGCTGCTCCTAGATGTTC
AGATGTGCCTGATTTGTTGCAGATCAAGAATTTGTTTTCTACAAAGTATG
GAAAGGAATTTGTCACTGCTGCATCTGAGCTTCGTCCTGACTCAAGTGTC
AACCGTGCAATAATCGAAAAGCTCTCAGTTAGTGCTCCATCAGGAGAGAT
AAGGCTCAAAGTCTTGAAGGAAATAGCCCAAGAACACAGTGTAGAATGGG
ATTCTTCTAGCACTGAAGCAGAGTTCAGCAAAAAGCATGAAGATTTGCTG
GCTGGATCAAAACAAGTATGCGCTGAGGCTGCAGTTTCTCAATCTATTAT
TAGACAAGCCTCTATTAAACCTTCACCTTCTAATGGGGCGAAACCTGTTC
TACTTACCAATGCTAAACAGGCATCTCAACACCAGCAAGCTCCTGGCCCT
GTGAGCAAGGCGGCCTTGTTGACTAGTAGTGAAATTGAGCCTTCAGCCAA
AAATTGTACAGCTGGTTCAGTTAGTGACATTAAAACAGAGACAACATCTC
GACCATCTGATGTCTTGGAAAGAGCTCGAGCTGCCATTGCCTCTGCAGAG
TGTGCAATAGCAGCTGCCCGTGCAGCTGCTGAGCTGGTGAATGTTAAATT
TGGTTCAATGAAACTAGAAGGAACATCATCGTAA
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protein sequence of Tc02v2_p019950.1

>Tc02v2_p019950.1 ID=Tc02v2_p019950.1|Name=Tc02v2_p019950.1|organism=Theobroma cacao|type=polypeptide|length=328bp
MSLLNQLFNRGVFGAKCKTCLSLAISRIKLLQNKRDLQLKHMRKEIAQFL
QAGQEPIARIRVEHIIREQNIWAAYEILELFCEFVLARVPILESQKECPS
ELREAVASIIFAAPRCSDVPDLLQIKNLFSTKYGKEFVTAASELRPDSSV
NRAIIEKLSVSAPSGEIRLKVLKEIAQEHSVEWDSSSTEAEFSKKHEDLL
AGSKQVCAEAAVSQSIIRQASIKPSPSNGAKPVLLTNAKQASQHQQAPGP
VSKAALLTSSEIEPSAKNCTAGSVSDIKTETTSRPSDVLERARAAIASAE
CAIAAARAAAELVNVKFGSMKLEGTSS*
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