Tc02v2_t015390.9

Overview
NameTc02v2_t015390.9
Unique NameTc02v2_t015390.9
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2565
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productprobable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2, transcript variant X1
NoteProbable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608727
GenbankXM_018116066.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g015390Tc02v2_g015390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p015390.9Tc02v2_p015390.9Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto110048auto110048Theobroma cacaoexon
exon-auto110049auto110049Theobroma cacaoexon
exon-auto110050auto110050Theobroma cacaoexon
exon-auto110051auto110051Theobroma cacaoexon
exon-auto110052auto110052Theobroma cacaoexon
exon-auto110053auto110053Theobroma cacaoexon
exon-auto110054auto110054Theobroma cacaoexon
exon-auto110055auto110055Theobroma cacaoexon
exon-auto110056auto110056Theobroma cacaoexon
exon-auto110057auto110057Theobroma cacaoexon
exon-auto110058auto110058Theobroma cacaoexon
exon-auto110059auto110059Theobroma cacaoexon
exon-auto110060auto110060Theobroma cacaoexon
exon-auto110061auto110061Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto110062auto110062Theobroma cacaoCDS
CDS-auto110063auto110063Theobroma cacaoCDS
CDS-auto110064auto110064Theobroma cacaoCDS
CDS-auto110065auto110065Theobroma cacaoCDS
CDS-auto110066auto110066Theobroma cacaoCDS
CDS-auto110067auto110067Theobroma cacaoCDS
CDS-auto110068auto110068Theobroma cacaoCDS
CDS-auto110069auto110069Theobroma cacaoCDS
CDS-auto110070auto110070Theobroma cacaoCDS
CDS-auto110071auto110071Theobroma cacaoCDS
CDS-auto110072auto110072Theobroma cacaoCDS
CDS-auto110073auto110073Theobroma cacaoCDS
CDS-auto110074auto110074Theobroma cacaoCDS
CDS-auto110075auto110075Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t015390.9 ID=Tc02v2_t015390.9|Name=Tc02v2_t015390.9|organism=Theobroma cacao|type=mRNA|length=2565bp
ATGAGAAAGAGCACATCTCCTTGCGATCTCAGAAACCTTCCTTGGCAATA
CCCGCATTTCCCTTGGAAAAATCCTCTCTCCCCTTTTTTCCTTTGTTTTT
TTGTTCTTCTTTCGTCCCATTCTTATATCCATCAAATTTCCCTCCATTTC
ACTGCTTCCACCAAAACCACCCCATCACCGACGGTATCACCCAGCCGACT
CTTCTCTTTTCAACGCGTCTTCATCAATCACGCCCCAGATTACTCTGCTA
CGGTTTTCTTCCTCAGCCATGAAAATCACTTTAATGTTTTAACTCTCAAC
GTTGTTTCCTCTGAACTTGTGGACATGGAAGTTCAAGATCAAAATGAGCA
TAACCAAGAAAAGAAGATGCTACCACCAACAAGAGGAACTTTTCAGTCTC
GTGAAGAACTGCTCAAACATGTCCGTGACTTTGCATTGACCCAAGGATAT
ATGGTATCCATTAGGGATTCTGCAAAGGATAGGTATGTGACTGTTGCTTG
TGATAGAGGTGGTGTTTATCGTAAAAGGCTTAAGAATGGTGAAAACATGC
GCCAAAGAAAGAATGCTTCTCGCCTGACAAATTGTCCTTTTGAAGTTGTG
GGCAAAAAGGATGATGATGTATGGACACTCACGGTTAAAAATGGAGAACA
CAATCATGAACCTTCTAATACTTCTGACCATCCTTCTTGCCGTCGTTTTA
CAGAAGAGGAGGTATTGATAATAAGGGACATGAGTGCGGCTGGAAAACGG
CCACGCCAGATCCTCAAGGCGTTAAGGCAAAGAAATCCAAATCTTGTATC
GGATTCAAGGAATGTTTACAATGTCAAAGCTAAGATCCGTCGAGGGAGTT
TATCAGGTGAGGACATTCAAGAAAAAAAAGCTACAAATTTGACCCTACTA
ATTAAACCTCCAGTTTCTTTAGAAGGCAAGAAAGCGGAGGTGTCGTGTTC
ATCATCGACGGAGACGATGAACACCAATGGTGTTGCAGCGACAGTGACAC
AGGCTCAGCCAATGGTGCATAACAGCTTTGCAATGTCACAGGCGTACGTG
GAGAGCAAAGAAGTGACTGAGACAAAAGCTTTAGTGGCAGAGCTGTGCCA
ACATTTTTATACGCTTGGTTGGCTTGCGGGTACTGGGGGGAGCATCACTA
TTAGGGTGCATGACGGCTCCATTCCTAGACACCATCAGCTCATCGTCATG
TCTCCTTCTGGTGTTCAGATGGAGAGAATGGTAGCGGAGGGTATGTATGT
GTTATCTTCAGATGGATTTATAATGTCAACACCTCCTTTGAAGCTGTATC
CCTATCAACCTCCAAAGTGCACCGACTGTGCTCCTCTCTTCATGAAGGTT
TATGAAATCTGTAATGCTGGGGCTGTTGTCCACAGTCATGGACTGGAGGC
TTGTCTTGTTACAATGATCAATCCTTTCTCAAAGGAGTTCCGAATTACTC
ATATGGAAATGATAAAAGGAATTCAAGGCCATGGTTATCATGATGAACTT
GTGGTCCCAATAATTGAGAACACTGCCCATGAAGGAGAGCTCACAGAATC
TCTTACAGAAGCGATGAGAGCATATCCAAAAACAACAGCCGTACTTGTTC
GCAACCACGGAGTGTATATATGGGGAGATTCATGGATCAGCACCAAAACT
CAGGCTGAATGCTATCATTATCTTTTTGATGCTGCTATCAAGCTTCATCA
GTTGGGGCTGGACTGGTCCAGTCCAAATCATGGTCCCCTACGCAATGTAA
ATGGACTTTGGGGATGTGCTGGGAATTCCAGTAGGGGTCCAAAGGTGGGA
ACTTTTGGTCTGGATTACATGATTGAGCCTTCTCAGCGTTGTCTACTCCT
TACTGTTGAAGGGACAGTGACCCCTATGTCATTCGTGACTGATATTCTCT
TTCCCTATGCCCATGATAATGTGCGAAAACATTTAGCAATGACATATGAC
ACTGAAGAAACTCAGCATGATATTGACCTGCTGCGCTCCCAAATACAGGA
GGATCTGGAACAAGGTGTTGCTGGAGCTGTGCCTATACCTCCAGATTATG
TTGGGAAAGAGCTAGTGATTGCTTCCTTGGCTGCTAATGTTGAAGCTATG
ATTAACACTGACAGGAAGGTCACTTCCCTAAAACAACTAGAAGGTCGTAT
ATGGAGAACTGGATTTCAAAGCAATGAGTTGGTTGCTGTTGTATTCGAGG
ACGTACCTGAAGCTCTTGAGAAGTGGCATGCTTCAGGCATCAAGGTGTAC
ATATTCGCATGTGGTAGCAGGGAAGTACAACAACTTTTGTTTGCTAACTC
TAACTATGGGGACTTGAGAAAATACTTGTGTGGGTTTTTTGATACCACAG
TGGGAAACAAACAAGTCGCGCATAGTTATTTTGAGATTTTGCAAACTGTG
GGAGTTGATAGACCAGCAGACATGTTATTTGTAACAGATCGCTTTCAGGA
AGCTGAGGCAGCCAGGGCTGCAGGTTTGGAAGTGATAATCTCCATCCGTC
CAGGAAATGGACCTCTCCCGCAGAATCATGGGTTTAGAACAATTGCATCC
TTGTTGGAAATATAA
back to top

protein sequence of Tc02v2_p015390.9

>Tc02v2_p015390.9 ID=Tc02v2_p015390.9|Name=Tc02v2_p015390.9|organism=Theobroma cacao|type=polypeptide|length=855bp
MRKSTSPCDLRNLPWQYPHFPWKNPLSPFFLCFFVLLSSHSYIHQISLHF
TASTKTTPSPTVSPSRLFSFQRVFINHAPDYSATVFFLSHENHFNVLTLN
VVSSELVDMEVQDQNEHNQEKKMLPPTRGTFQSREELLKHVRDFALTQGY
MVSIRDSAKDRYVTVACDRGGVYRKRLKNGENMRQRKNASRLTNCPFEVV
GKKDDDVWTLTVKNGEHNHEPSNTSDHPSCRRFTEEEVLIIRDMSAAGKR
PRQILKALRQRNPNLVSDSRNVYNVKAKIRRGSLSGEDIQEKKATNLTLL
IKPPVSLEGKKAEVSCSSSTETMNTNGVAATVTQAQPMVHNSFAMSQAYV
ESKEVTETKALVAELCQHFYTLGWLAGTGGSITIRVHDGSIPRHHQLIVM
SPSGVQMERMVAEGMYVLSSDGFIMSTPPLKLYPYQPPKCTDCAPLFMKV
YEICNAGAVVHSHGLEACLVTMINPFSKEFRITHMEMIKGIQGHGYHDEL
VVPIIENTAHEGELTESLTEAMRAYPKTTAVLVRNHGVYIWGDSWISTKT
QAECYHYLFDAAIKLHQLGLDWSSPNHGPLRNVNGLWGCAGNSSRGPKVG
TFGLDYMIEPSQRCLLLTVEGTVTPMSFVTDILFPYAHDNVRKHLAMTYD
TEETQHDIDLLRSQIQEDLEQGVAGAVPIPPDYVGKELVIASLAANVEAM
INTDRKVTSLKQLEGRIWRTGFQSNELVAVVFEDVPEALEKWHASGIKVY
IFACGSREVQQLLFANSNYGDLRKYLCGFFDTTVGNKQVAHSYFEILQTV
GVDRPADMLFVTDRFQEAEAARAAGLEVIISIRPGNGPLPQNHGFRTIAS
LLEI*
back to top