Tc02v2_t015390.5

Overview
NameTc02v2_t015390.5
Unique NameTc02v2_t015390.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2550
Properties
Property NameValue
NoteProbable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productprobable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608727
GenbankXM_018116067.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g015390Tc02v2_g015390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p015390.5Tc02v2_p015390.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto109928auto109928Theobroma cacaoexon
exon-auto109929auto109929Theobroma cacaoexon
exon-auto109930auto109930Theobroma cacaoexon
exon-auto109931auto109931Theobroma cacaoexon
exon-auto109932auto109932Theobroma cacaoexon
exon-auto109933auto109933Theobroma cacaoexon
exon-auto109934auto109934Theobroma cacaoexon
exon-auto109935auto109935Theobroma cacaoexon
exon-auto109936auto109936Theobroma cacaoexon
exon-auto109937auto109937Theobroma cacaoexon
exon-auto109938auto109938Theobroma cacaoexon
exon-auto109939auto109939Theobroma cacaoexon
exon-auto109940auto109940Theobroma cacaoexon
exon-auto109941auto109941Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto109942auto109942Theobroma cacaoCDS
CDS-auto109943auto109943Theobroma cacaoCDS
CDS-auto109944auto109944Theobroma cacaoCDS
CDS-auto109945auto109945Theobroma cacaoCDS
CDS-auto109946auto109946Theobroma cacaoCDS
CDS-auto109947auto109947Theobroma cacaoCDS
CDS-auto109948auto109948Theobroma cacaoCDS
CDS-auto109949auto109949Theobroma cacaoCDS
CDS-auto109950auto109950Theobroma cacaoCDS
CDS-auto109951auto109951Theobroma cacaoCDS
CDS-auto109952auto109952Theobroma cacaoCDS
CDS-auto109953auto109953Theobroma cacaoCDS
CDS-auto109954auto109954Theobroma cacaoCDS
CDS-auto109955auto109955Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t015390.5 ID=Tc02v2_t015390.5|Name=Tc02v2_t015390.5|organism=Theobroma cacao|type=mRNA|length=2550bp
ATGAGAAAGAGCACATCTCCTTGCGATCTCAGAAACCTTCCTTGGCAATA
CCCGCATTTCCCTTGGAAAAATCCTCTCTCCCCTTTTTTCCTTTGTTTTT
TTGTTCTTCTTTCGTCCCATTCTTATATCCATCAAATTTCCCTCCATTTC
ACTGCTTCCACCAAAACCACCCCATCACCGACGGTATCACCCAGCCGACT
CTTCTCTTTTCAACGCGTCTTCATCAATCACGCCCCAGATTACTCTGCTA
CGGTTTTCTTCCTCAGCCATGAAAATCACTTTAATGTTTTAACTCTCAAC
GTTGTTTCCTCTGAACTTGTGGACATGGAAGTTCAAGATCAAAATGAGCA
TAACCAAGAAAAGAAGATGCTACCACCAACAAGAGGAACTTTTCAGTCTC
GTGAAGAACTGCTCAAACATGTCCGTGACTTTGCATTGACCCAAGGATAT
ATGGTATCCATTAGGGATTCTGCAAAGGATAGGTATGTGACTGTTGCTTG
TGATAGAGGTGGTGTTTATCGTAAAAGGCTTAAGAATGGTGAAAACATGC
GCCAAAGAAAGAATGCTTCTCGCCTGACAAATTGTCCTTTTGAAGTTGTG
GGCAAAAAGGATGATGATGTATGGACACTCACGGTTAAAAATGGAGAACA
CAATCATGAACCTTCTAATACTTCTGACCATCCTTCTTGCCGTCGTTTTA
CAGAAGAGGAGGTATTGATAATAAGGGACATGAGTGCGGCTGGAAAACGG
CCACGCCAGATCCTCAAGGCGTTAAGGCAAAGAAATCCAAATCTTGTATC
GGATTCAAGGAATGTTTACAATGTCAAAGCTAAGATCCGTCGAGGGAGTT
TATCAGAAAAAAAAGCTACAAATTTGACCCTACTAATTAAACCTCCAGTT
TCTTTAGAAGGCAAGAAAGCGGAGGTGTCGTGTTCATCATCGACGGAGAC
GATGAACACCAATGGTGTTGCAGCGACAGTGACACAGGCTCAGCCAATGG
TGCATAACAGCTTTGCAATGTCACAGGCGTACGTGGAGAGCAAAGAAGTG
ACTGAGACAAAAGCTTTAGTGGCAGAGCTGTGCCAACATTTTTATACGCT
TGGTTGGCTTGCGGGTACTGGGGGGAGCATCACTATTAGGGTGCATGACG
GCTCCATTCCTAGACACCATCAGCTCATCGTCATGTCTCCTTCTGGTGTT
CAGATGGAGAGAATGGTAGCGGAGGGTATGTATGTGTTATCTTCAGATGG
ATTTATAATGTCAACACCTCCTTTGAAGCTGTATCCCTATCAACCTCCAA
AGTGCACCGACTGTGCTCCTCTCTTCATGAAGGTTTATGAAATCTGTAAT
GCTGGGGCTGTTGTCCACAGTCATGGACTGGAGGCTTGTCTTGTTACAAT
GATCAATCCTTTCTCAAAGGAGTTCCGAATTACTCATATGGAAATGATAA
AAGGAATTCAAGGCCATGGTTATCATGATGAACTTGTGGTCCCAATAATT
GAGAACACTGCCCATGAAGGAGAGCTCACAGAATCTCTTACAGAAGCGAT
GAGAGCATATCCAAAAACAACAGCCGTACTTGTTCGCAACCACGGAGTGT
ATATATGGGGAGATTCATGGATCAGCACCAAAACTCAGGCTGAATGCTAT
CATTATCTTTTTGATGCTGCTATCAAGCTTCATCAGTTGGGGCTGGACTG
GTCCAGTCCAAATCATGGTCCCCTACGCAATGTAAATGGACTTTGGGGAT
GTGCTGGGAATTCCAGTAGGGGTCCAAAGGTGGGAACTTTTGGTCTGGAT
TACATGATTGAGCCTTCTCAGCGTTGTCTACTCCTTACTGTTGAAGGGAC
AGTGACCCCTATGTCATTCGTGACTGATATTCTCTTTCCCTATGCCCATG
ATAATGTGCGAAAACATTTAGCAATGACATATGACACTGAAGAAACTCAG
CATGATATTGACCTGCTGCGCTCCCAAATACAGGAGGATCTGGAACAAGG
TGTTGCTGGAGCTGTGCCTATACCTCCAGATTATGTTGGGAAAGAGCTAG
TGATTGCTTCCTTGGCTGCTAATGTTGAAGCTATGATTAACACTGACAGG
AAGGTCACTTCCCTAAAACAACTAGAAGGTCGTATATGGAGAACTGGATT
TCAAAGCAATGAGTTGGTTGCTGTTGTATTCGAGGACGTACCTGAAGCTC
TTGAGAAGTGGCATGCTTCAGGCATCAAGGTGTACATATTCGCATGTGGT
AGCAGGGAAGTACAACAACTTTTGTTTGCTAACTCTAACTATGGGGACTT
GAGAAAATACTTGTGTGGGTTTTTTGATACCACAGTGGGAAACAAACAAG
TCGCGCATAGTTATTTTGAGATTTTGCAAACTGTGGGAGTTGATAGACCA
GCAGACATGTTATTTGTAACAGATCGCTTTCAGGAAGCTGAGGCAGCCAG
GGCTGCAGGTTTGGAAGTGATAATCTCCATCCGTCCAGGAAATGGACCTC
TCCCGCAGAATCATGGGTTTAGAACAATTGCATCCTTGTTGGAAATATAA
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protein sequence of Tc02v2_p015390.5

>Tc02v2_p015390.5 ID=Tc02v2_p015390.5|Name=Tc02v2_p015390.5|organism=Theobroma cacao|type=polypeptide|length=850bp
MRKSTSPCDLRNLPWQYPHFPWKNPLSPFFLCFFVLLSSHSYIHQISLHF
TASTKTTPSPTVSPSRLFSFQRVFINHAPDYSATVFFLSHENHFNVLTLN
VVSSELVDMEVQDQNEHNQEKKMLPPTRGTFQSREELLKHVRDFALTQGY
MVSIRDSAKDRYVTVACDRGGVYRKRLKNGENMRQRKNASRLTNCPFEVV
GKKDDDVWTLTVKNGEHNHEPSNTSDHPSCRRFTEEEVLIIRDMSAAGKR
PRQILKALRQRNPNLVSDSRNVYNVKAKIRRGSLSEKKATNLTLLIKPPV
SLEGKKAEVSCSSSTETMNTNGVAATVTQAQPMVHNSFAMSQAYVESKEV
TETKALVAELCQHFYTLGWLAGTGGSITIRVHDGSIPRHHQLIVMSPSGV
QMERMVAEGMYVLSSDGFIMSTPPLKLYPYQPPKCTDCAPLFMKVYEICN
AGAVVHSHGLEACLVTMINPFSKEFRITHMEMIKGIQGHGYHDELVVPII
ENTAHEGELTESLTEAMRAYPKTTAVLVRNHGVYIWGDSWISTKTQAECY
HYLFDAAIKLHQLGLDWSSPNHGPLRNVNGLWGCAGNSSRGPKVGTFGLD
YMIEPSQRCLLLTVEGTVTPMSFVTDILFPYAHDNVRKHLAMTYDTEETQ
HDIDLLRSQIQEDLEQGVAGAVPIPPDYVGKELVIASLAANVEAMINTDR
KVTSLKQLEGRIWRTGFQSNELVAVVFEDVPEALEKWHASGIKVYIFACG
SREVQQLLFANSNYGDLRKYLCGFFDTTVGNKQVAHSYFEILQTVGVDRP
ADMLFVTDRFQEAEAARAAGLEVIISIRPGNGPLPQNHGFRTIASLLEI*
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