Tc02v2_t015390.4

Overview
NameTc02v2_t015390.4
Unique NameTc02v2_t015390.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2508
Properties
Property NameValue
NoteProbable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Productprobable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2, transcript variant X6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608727
GenbankXM_018116072.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g015390Tc02v2_g015390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p015390.4Tc02v2_p015390.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto109898auto109898Theobroma cacaoexon
exon-auto109899auto109899Theobroma cacaoexon
exon-auto109900auto109900Theobroma cacaoexon
exon-auto109901auto109901Theobroma cacaoexon
exon-auto109902auto109902Theobroma cacaoexon
exon-auto109903auto109903Theobroma cacaoexon
exon-auto109904auto109904Theobroma cacaoexon
exon-auto109905auto109905Theobroma cacaoexon
exon-auto109906auto109906Theobroma cacaoexon
exon-auto109907auto109907Theobroma cacaoexon
exon-auto109908auto109908Theobroma cacaoexon
exon-auto109909auto109909Theobroma cacaoexon
exon-auto109910auto109910Theobroma cacaoexon
exon-auto109911auto109911Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto109912auto109912Theobroma cacaoCDS
CDS-auto109913auto109913Theobroma cacaoCDS
CDS-auto109914auto109914Theobroma cacaoCDS
CDS-auto109915auto109915Theobroma cacaoCDS
CDS-auto109916auto109916Theobroma cacaoCDS
CDS-auto109917auto109917Theobroma cacaoCDS
CDS-auto109918auto109918Theobroma cacaoCDS
CDS-auto109919auto109919Theobroma cacaoCDS
CDS-auto109920auto109920Theobroma cacaoCDS
CDS-auto109921auto109921Theobroma cacaoCDS
CDS-auto109922auto109922Theobroma cacaoCDS
CDS-auto109923auto109923Theobroma cacaoCDS
CDS-auto109924auto109924Theobroma cacaoCDS
CDS-auto109925auto109925Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t015390.4 ID=Tc02v2_t015390.4|Name=Tc02v2_t015390.4|organism=Theobroma cacao|type=mRNA|length=2508bp
ATGAGAAAGAGCACATCTCCTTGCGATCTCAGAAACCTTCCTTGGCAATA
CCCGCATTTCCCTTGGAAAAATCCTCTCTCCCCTTTTTTCCTTTGTTTTT
TTGTTCTTCTTTCGTCCCATTCTTATATCCATCAAATTTCCCTCCATTTC
ACTGCTTCCACCAAAACCACCCCATCACCGACGGTATCACCCAGCCGACT
CTTCTCTTTTCAACGCGTCTTCATCAATCACGCCCCAGATTACTCTGCTA
CGGTTTTCTTCCTCAGCCATGAAAATCACTTTAATGTTTTAACTCTCAAC
GTTGTTTCCTCTGAACTTGTGGACATGGAAGTTCAAGATCAAAATGAGCA
TAACCAAGAAAAGAAGATGCTACCACCAACAAGAGGAACTTTTCAGTCTC
GTGAAGAACTGCTCAAACATGTCCGTGACTTTGCATTGACCCAAGGATAT
ATGGTATCCATTAGGGATTCTGCAAAGGATAGGTATGTGACTGTTGCTTG
TGATAGAGGTGGTGTTTATCGTAAAAGGCTTAAGAATGGTGAAAACATGC
GCCAAAGAAAGAATGCTTCTCGCCTGACAAATTGTCCTTTTGAAGTTGTG
GGCAAAAAGGATGATGATGTATGGACACTCACGGTTAAAAATGGAGAACA
CAATCATGAACCTTCTAATACTTCTGACCATCCTTCTTGCCGTCGTTTTA
CAGAAGAGGAGGTATTGATAATAAGGGACATGAGTGCGGCTGGAAAACGG
CCACGCCAGATCCTCAAGGCGTTAAGGCAAAGAAATCCAAATCTTGTATC
GGATTCAAGGAATGTTTACAATGTCAAAGCTAAGATCCGTCGAGGGAGTT
TATCAGTTTCTTTAGAAGGCAAGAAAGCGGAGGTGTCGTGTTCATCATCG
ACGGAGACGATGAACACCAATGGTGTTGCAGCGACAGTGACACAGGCTCA
GCCAATGGTGCATAACAGCTTTGCAATGTCACAGGCGTACGTGGAGAGCA
AAGAAGTGACTGAGACAAAAGCTTTAGTGGCAGAGCTGTGCCAACATTTT
TATACGCTTGGTTGGCTTGCGGGTACTGGGGGGAGCATCACTATTAGGGT
GCATGACGGCTCCATTCCTAGACACCATCAGCTCATCGTCATGTCTCCTT
CTGGTGTTCAGATGGAGAGAATGGTAGCGGAGGGTATGTATGTGTTATCT
TCAGATGGATTTATAATGTCAACACCTCCTTTGAAGCTGTATCCCTATCA
ACCTCCAAAGTGCACCGACTGTGCTCCTCTCTTCATGAAGGTTTATGAAA
TCTGTAATGCTGGGGCTGTTGTCCACAGTCATGGACTGGAGGCTTGTCTT
GTTACAATGATCAATCCTTTCTCAAAGGAGTTCCGAATTACTCATATGGA
AATGATAAAAGGAATTCAAGGCCATGGTTATCATGATGAACTTGTGGTCC
CAATAATTGAGAACACTGCCCATGAAGGAGAGCTCACAGAATCTCTTACA
GAAGCGATGAGAGCATATCCAAAAACAACAGCCGTACTTGTTCGCAACCA
CGGAGTGTATATATGGGGAGATTCATGGATCAGCACCAAAACTCAGGCTG
AATGCTATCATTATCTTTTTGATGCTGCTATCAAGCTTCATCAGTTGGGG
CTGGACTGGTCCAGTCCAAATCATGGTCCCCTACGCAATGTAAATGGACT
TTGGGGATGTGCTGGGAATTCCAGTAGGGGTCCAAAGGTGGGAACTTTTG
GTCTGGATTACATGATTGAGCCTTCTCAGCGTTGTCTACTCCTTACTGTT
GAAGGGACAGTGACCCCTATGTCATTCGTGACTGATATTCTCTTTCCCTA
TGCCCATGATAATGTGCGAAAACATTTAGCAATGACATATGACACTGAAG
AAACTCAGCATGATATTGACCTGCTGCGCTCCCAAATACAGGAGGATCTG
GAACAAGGTGTTGCTGGAGCTGTGCCTATACCTCCAGATTATGTTGGGAA
AGAGCTAGTGATTGCTTCCTTGGCTGCTAATGTTGAAGCTATGATTAACA
CTGACAGGAAGGTCACTTCCCTAAAACAACTAGAAGGTCGTATATGGAGA
ACTGGATTTCAAAGCAATGAGTTGGTTGCTGTTGTATTCGAGGACGTACC
TGAAGCTCTTGAGAAGTGGCATGCTTCAGGCATCAAGGTGTACATATTCG
CATGTGGTAGCAGGGAAGTACAACAACTTTTGTTTGCTAACTCTAACTAT
GGGGACTTGAGAAAATACTTGTGTGGGTTTTTTGATACCACAGTGGGAAA
CAAACAAGTCGCGCATAGTTATTTTGAGATTTTGCAAACTGTGGGAGTTG
ATAGACCAGCAGACATGTTATTTGTAACAGATCGCTTTCAGGAAGCTGAG
GCAGCCAGGGCTGCAGGTTTGGAAGTGATAATCTCCATCCGTCCAGGAAA
TGGACCTCTCCCGCAGAATCATGGGTTTAGAACAATTGCATCCTTGTTGG
AAATATAA
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protein sequence of Tc02v2_p015390.4

>Tc02v2_p015390.4 ID=Tc02v2_p015390.4|Name=Tc02v2_p015390.4|organism=Theobroma cacao|type=polypeptide|length=836bp
MRKSTSPCDLRNLPWQYPHFPWKNPLSPFFLCFFVLLSSHSYIHQISLHF
TASTKTTPSPTVSPSRLFSFQRVFINHAPDYSATVFFLSHENHFNVLTLN
VVSSELVDMEVQDQNEHNQEKKMLPPTRGTFQSREELLKHVRDFALTQGY
MVSIRDSAKDRYVTVACDRGGVYRKRLKNGENMRQRKNASRLTNCPFEVV
GKKDDDVWTLTVKNGEHNHEPSNTSDHPSCRRFTEEEVLIIRDMSAAGKR
PRQILKALRQRNPNLVSDSRNVYNVKAKIRRGSLSVSLEGKKAEVSCSSS
TETMNTNGVAATVTQAQPMVHNSFAMSQAYVESKEVTETKALVAELCQHF
YTLGWLAGTGGSITIRVHDGSIPRHHQLIVMSPSGVQMERMVAEGMYVLS
SDGFIMSTPPLKLYPYQPPKCTDCAPLFMKVYEICNAGAVVHSHGLEACL
VTMINPFSKEFRITHMEMIKGIQGHGYHDELVVPIIENTAHEGELTESLT
EAMRAYPKTTAVLVRNHGVYIWGDSWISTKTQAECYHYLFDAAIKLHQLG
LDWSSPNHGPLRNVNGLWGCAGNSSRGPKVGTFGLDYMIEPSQRCLLLTV
EGTVTPMSFVTDILFPYAHDNVRKHLAMTYDTEETQHDIDLLRSQIQEDL
EQGVAGAVPIPPDYVGKELVIASLAANVEAMINTDRKVTSLKQLEGRIWR
TGFQSNELVAVVFEDVPEALEKWHASGIKVYIFACGSREVQQLLFANSNY
GDLRKYLCGFFDTTVGNKQVAHSYFEILQTVGVDRPADMLFVTDRFQEAE
AARAAGLEVIISIRPGNGPLPQNHGFRTIASLLEI*
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