Tc02v2_t015270.1

Overview
NameTc02v2_t015270.1
Unique NameTc02v2_t015270.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1356
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productmannan endo-1,4-beta-mannosidase 2
NoteMannan endo-1,4-beta-mannosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608714
GenbankXM_007043541.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g015270Tc02v2_g015270Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p015270.1Tc02v2_p015270.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto109676auto109676Theobroma cacaoexon
exon-auto109677auto109677Theobroma cacaoexon
exon-auto109678auto109678Theobroma cacaoexon
exon-auto109679auto109679Theobroma cacaoexon
exon-auto109680auto109680Theobroma cacaoexon
exon-auto109681auto109681Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto109682auto109682Theobroma cacaoCDS
CDS-auto109683auto109683Theobroma cacaoCDS
CDS-auto109684auto109684Theobroma cacaoCDS
CDS-auto109685auto109685Theobroma cacaoCDS
CDS-auto109686auto109686Theobroma cacaoCDS
CDS-auto109687auto109687Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t015270.1 ID=Tc02v2_t015270.1|Name=Tc02v2_t015270.1|organism=Theobroma cacao|type=mRNA|length=1356bp
ATGAAGAGGGATCTGCGTTCACATTTGAGTTTAAGGTTCCTTCCCATATA
TAGAAAGATGGTGGCTGGAAATGGGCTGTTATACCCAATTCTTGGATTTG
CGTCATGTGTGGCTTTTATTTACATGTCTTTTGGCGACTTGAAGCTTAGT
AGTTTTCCCAAGGAACCAAGGTTAAGTTTTGTGGAAAGGAATGGGACACA
ATTCTTTTTGGATGGTAAACCGTTGTATGTTAATGGATGGAATTCGTACT
GGTTAATGGCCCATTCTGTGGATGAAAATAATAGACCTAGGGTCAGTGCA
ATGCTGCAAGCTGGTGCAAAGATGGGTCTCACTGTCTGTAGAACTTGGGC
CTTTAACGATGGAGGGTATGATGCTCTCCAGATTTCCCCGGGGCAATTTG
ATGAGCGAGTTTTCAAGGCCTTGGATTATGTCATTGTAGAAGCAAGGCAA
CATGGAGTTAGGCTGCTTCTTAGCTTAGTGAACAACTTGCAAGCATATGG
TGGGAAGACACAGTATGTCAACTGGGCATGGCAAGAAGGCGTTGGTTTGA
GCTCTTCTAATGATTCCTTCTTCTTTGATCCATCAATCCGCAAATATTTC
AAGAACTATGTCCTGACTGTCCTCACAAGGAAGAACACCATCACTGGAAT
TGAGTATCGGAATGATCCCACCATCTTTGCTTGGGAGTTGATGAATGAAC
CCCGTTGCATGTCTGATCCTTCTGGGGATACACTTCAAGATTGGTTAGAA
GAGATGACAGCTTTCGTAAAATCAATTGATAAAAATCATCTACTGACCAT
TGGCCTGGAAGGATTCTATGGTCCTAAAAGCCCCAAGAAGTCAACTGTGA
ATCCAGAAGAGTGGGCATCGACCCTTGGATCTGATTTTGTCCGCAACTCC
AACATTGCAAATGTTGATTTTACCTCTGTTCATATATATCCTGACCATTG
GTTTCATGATCTAGGATTTGAAGAAAAACGGAGTTATGTTTCCAAGTGGA
TGCGTTCACACATTGAAGATTGTGACAAGGAACTGAAGAAGCCTGTTATG
TTCACTGAATACGGCTTGTCAAACCAGAACAAAGACTTCCAGCCATCCCA
GAGAGAGCGGTTTTATAGAACTATTTCGGACATCATCTATAAATCTGCAA
AGAAGAAAGGGTCTGGGGCAGGTGCTTTAGTCTGGCAATTCTTTGTTGAA
GGAATGGAAGAGTATAATGATGATTTTGGGCTTGTACCATGGGAAAGCCC
CGCAATTTACAAACTGACAATAGAACAGTCATGCAGATTGGCTAGAATCC
AAGGACTTATTCATGAAAAGGGAAACTGGAAAGAACTGTGTTCCAAGAGA
GAGTAA
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protein sequence of Tc02v2_p015270.1

>Tc02v2_p015270.1 ID=Tc02v2_p015270.1|Name=Tc02v2_p015270.1|organism=Theobroma cacao|type=polypeptide|length=452bp
MKRDLRSHLSLRFLPIYRKMVAGNGLLYPILGFASCVAFIYMSFGDLKLS
SFPKEPRLSFVERNGTQFFLDGKPLYVNGWNSYWLMAHSVDENNRPRVSA
MLQAGAKMGLTVCRTWAFNDGGYDALQISPGQFDERVFKALDYVIVEARQ
HGVRLLLSLVNNLQAYGGKTQYVNWAWQEGVGLSSSNDSFFFDPSIRKYF
KNYVLTVLTRKNTITGIEYRNDPTIFAWELMNEPRCMSDPSGDTLQDWLE
EMTAFVKSIDKNHLLTIGLEGFYGPKSPKKSTVNPEEWASTLGSDFVRNS
NIANVDFTSVHIYPDHWFHDLGFEEKRSYVSKWMRSHIEDCDKELKKPVM
FTEYGLSNQNKDFQPSQRERFYRTISDIIYKSAKKKGSGAGALVWQFFVE
GMEEYNDDFGLVPWESPAIYKLTIEQSCRLARIQGLIHEKGNWKELCSKR
E*
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