Tc02v2_t015250.2

Overview
NameTc02v2_t015250.2
Unique NameTc02v2_t015250.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1479
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productputative ubiquitin-conjugating enzyme E2 38, transcript variant X2
NotePutative ubiquitin-conjugating enzyme E2 38
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608712
GenbankXM_007043539.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g015250Tc02v2_g015250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p015250.2Tc02v2_p015250.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto109655auto109655Theobroma cacaoexon
exon-auto109656auto109656Theobroma cacaoexon
exon-auto109657auto109657Theobroma cacaoexon
exon-auto109658auto109658Theobroma cacaoexon
exon-auto109659auto109659Theobroma cacaoexon
exon-auto109660auto109660Theobroma cacaoexon
exon-auto109661auto109661Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto109662auto109662Theobroma cacaoCDS
CDS-auto109663auto109663Theobroma cacaoCDS
CDS-auto109664auto109664Theobroma cacaoCDS
CDS-auto109665auto109665Theobroma cacaoCDS
CDS-auto109666auto109666Theobroma cacaoCDS
CDS-auto109667auto109667Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t015250.2 ID=Tc02v2_t015250.2|Name=Tc02v2_t015250.2|organism=Theobroma cacao|type=mRNA|length=1479bp
ATGGATATCGGACAAGTTGAAGATCCAACTACTGTTTTGATTGGTTCTGA
GAAAGCTGGCGTGGATAGCAAGGGAAAGAGTAAAATATGCTATGACAAGA
AGTGGGAAGACCATGTGAAGGATGCTTCAGCCAGTGAGCAGGGAAATTCT
GTTAGTGTTGCTGGGTCTGAGGATAGTAACAATCCTCTCAAGAGTTCTAC
CTCAGGATCAATCAACTCAAATAATCTCAATAGTTCTAACTCTGATATTT
CATATCATGATGATGACAACGATTGTGATGAGGACTGTGATGACTATGCT
GATGATGTTTCTGATTATGGTGACAATGATGATTTCTTATATGACGATGA
TTATTCGATTATGCAATCCCATTTTGATAATGTGGATCTCCCTCCTGGGG
TAGAGGCTTCAATTCCCTGGTTGAAAGACCCTGCTCCAATTGTAAATGTG
CCATCTGGTCTGGGTGCGTCTACTGGCCCTGGTCCTGCTGAAAGCATGAA
GTCAACAACATCAAATTTAGCTGGTAGCAAAGTGAAGTCAGCTTCTACCA
GTACTTCAATAGTCCCAAGAGAGTCAGGATCTGATCAGAAAGAAGAAGGA
AATGAAGAACATGATGTTATGCAAACGTTTCAAAGTTTTAAACATTTTGA
TGTTGTGGATGATTTCTCAGACCATCATTACAGCAATTTGACCTTATCAG
GAGAGAAGCAACCAAAGGAGTGGGCGAAGCGAATTCAAGATGAGTGGAAA
ATTTTGGAGAAAGACTTACCAGACACAATATACGTGAGAGTTTATGAAGC
CAGGATGGATCTTTTAAGGGCTGTCATTATAGGACCTTCTGGTACTCCTT
ACCATGATGGCCTTTTTGTATTTGATTGTTTCTTCCCTCCAAAATACCCC
AATGAGCCGCCGATGGTTTATTACTACTCTGGTGGCCTCCGGTTAAATCC
AAATTTGTACAACTGTGGTAAAGTATGCCTAAGCCTTTTGGGCACCTGGC
ATGGTCAACAGACTGAGATGTGGGTTCCAGGGCAATCAACCATGCTACAA
GTTTTGGTTTCCATACAAGCTCTGATTCTGAATGATAGACCCTTCTTTAA
TGAGCCTGGGTATGAAACTTCGTATGTTGGGGCTGAAGGTGACCGGAGGT
CCAGGAAGTACAATGAGGACGTGTTTGTTCTATCTTTGAAGACAATGATT
TACACACTAAGAAGACCGCCGAAGCATTTTGAGGCCTTTGTTGCTGGTCA
TTTTCGCAGCCGTGCACATGACATTATGGTGGCATGCAAAGCATATAAAG
AGGGTGCTAAGGTAGGGTGTGTTGTGGTTAAAGACGGTGTTCCAGATGCT
GATAAAATCGAAAAGGGTAGCTCAGAGGATTTTAAAGGAACAATGCAAAA
GATGATTAATTTAGTGGTTAAGGAGTTTGTGAAAAATGGGTCAACAGACT
GTGAGCAGTTTCAGGCTTCCAGAAGCTGA
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protein sequence of Tc02v2_p015250.2

>Tc02v2_p015250.2 ID=Tc02v2_p015250.2|Name=Tc02v2_p015250.2|organism=Theobroma cacao|type=polypeptide|length=493bp
MDIGQVEDPTTVLIGSEKAGVDSKGKSKICYDKKWEDHVKDASASEQGNS
VSVAGSEDSNNPLKSSTSGSINSNNLNSSNSDISYHDDDNDCDEDCDDYA
DDVSDYGDNDDFLYDDDYSIMQSHFDNVDLPPGVEASIPWLKDPAPIVNV
PSGLGASTGPGPAESMKSTTSNLAGSKVKSASTSTSIVPRESGSDQKEEG
NEEHDVMQTFQSFKHFDVVDDFSDHHYSNLTLSGEKQPKEWAKRIQDEWK
ILEKDLPDTIYVRVYEARMDLLRAVIIGPSGTPYHDGLFVFDCFFPPKYP
NEPPMVYYYSGGLRLNPNLYNCGKVCLSLLGTWHGQQTEMWVPGQSTMLQ
VLVSIQALILNDRPFFNEPGYETSYVGAEGDRRSRKYNEDVFVLSLKTMI
YTLRRPPKHFEAFVAGHFRSRAHDIMVACKAYKEGAKVGCVVVKDGVPDA
DKIEKGSSEDFKGTMQKMINLVVKEFVKNGSTDCEQFQASRS*
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