Tc02v2_t015250.1

Overview
NameTc02v2_t015250.1
Unique NameTc02v2_t015250.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1551
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productputative ubiquitin-conjugating enzyme E2 38, transcript variant X1
NotePutative ubiquitin-conjugating enzyme E2 38
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608712
GenbankXM_007043538.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g015250Tc02v2_g015250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p015250.1Tc02v2_p015250.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto109639auto109639Theobroma cacaoexon
exon-auto109640auto109640Theobroma cacaoexon
exon-auto109641auto109641Theobroma cacaoexon
exon-auto109642auto109642Theobroma cacaoexon
exon-auto109643auto109643Theobroma cacaoexon
exon-auto109644auto109644Theobroma cacaoexon
exon-auto109645auto109645Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto109646auto109646Theobroma cacaoCDS
CDS-auto109647auto109647Theobroma cacaoCDS
CDS-auto109648auto109648Theobroma cacaoCDS
CDS-auto109649auto109649Theobroma cacaoCDS
CDS-auto109650auto109650Theobroma cacaoCDS
CDS-auto109651auto109651Theobroma cacaoCDS
CDS-auto109652auto109652Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t015250.1 ID=Tc02v2_t015250.1|Name=Tc02v2_t015250.1|organism=Theobroma cacao|type=mRNA|length=1551bp
ATGGATCTTCGTGTAGACGAGACTTCGATCTCCAAGCGACTCAAACAAAC
CCAGATTCTTCTTTGTGATGCAATGGATATCGGACAAGTTGAAGATCCAA
CTACTGTTTTGATTGGTTCTGAGAAAGCTGGCGTGGATAGCAAGGGAAAG
AGTAAAATATGCTATGACAAGAAGTGGGAAGACCATGTGAAGGATGCTTC
AGCCAGTGAGCAGGGAAATTCTGTTAGTGTTGCTGGGTCTGAGGATAGTA
ACAATCCTCTCAAGAGTTCTACCTCAGGATCAATCAACTCAAATAATCTC
AATAGTTCTAACTCTGATATTTCATATCATGATGATGACAACGATTGTGA
TGAGGACTGTGATGACTATGCTGATGATGTTTCTGATTATGGTGACAATG
ATGATTTCTTATATGACGATGATTATTCGATTATGCAATCCCATTTTGAT
AATGTGGATCTCCCTCCTGGGGTAGAGGCTTCAATTCCCTGGTTGAAAGA
CCCTGCTCCAATTGTAAATGTGCCATCTGGTCTGGGTGCGTCTACTGGCC
CTGGTCCTGCTGAAAGCATGAAGTCAACAACATCAAATTTAGCTGGTAGC
AAAGTGAAGTCAGCTTCTACCAGTACTTCAATAGTCCCAAGAGAGTCAGG
ATCTGATCAGAAAGAAGAAGGAAATGAAGAACATGATGTTATGCAAACGT
TTCAAAGTTTTAAACATTTTGATGTTGTGGATGATTTCTCAGACCATCAT
TACAGCAATTTGACCTTATCAGGAGAGAAGCAACCAAAGGAGTGGGCGAA
GCGAATTCAAGATGAGTGGAAAATTTTGGAGAAAGACTTACCAGACACAA
TATACGTGAGAGTTTATGAAGCCAGGATGGATCTTTTAAGGGCTGTCATT
ATAGGACCTTCTGGTACTCCTTACCATGATGGCCTTTTTGTATTTGATTG
TTTCTTCCCTCCAAAATACCCCAATGAGCCGCCGATGGTTTATTACTACT
CTGGTGGCCTCCGGTTAAATCCAAATTTGTACAACTGTGGTAAAGTATGC
CTAAGCCTTTTGGGCACCTGGCATGGTCAACAGACTGAGATGTGGGTTCC
AGGGCAATCAACCATGCTACAAGTTTTGGTTTCCATACAAGCTCTGATTC
TGAATGATAGACCCTTCTTTAATGAGCCTGGGTATGAAACTTCGTATGTT
GGGGCTGAAGGTGACCGGAGGTCCAGGAAGTACAATGAGGACGTGTTTGT
TCTATCTTTGAAGACAATGATTTACACACTAAGAAGACCGCCGAAGCATT
TTGAGGCCTTTGTTGCTGGTCATTTTCGCAGCCGTGCACATGACATTATG
GTGGCATGCAAAGCATATAAAGAGGGTGCTAAGGTAGGGTGTGTTGTGGT
TAAAGACGGTGTTCCAGATGCTGATAAAATCGAAAAGGGTAGCTCAGAGG
ATTTTAAAGGAACAATGCAAAAGATGATTAATTTAGTGGTTAAGGAGTTT
GTGAAAAATGGGTCAACAGACTGTGAGCAGTTTCAGGCTTCCAGAAGCTG
A
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protein sequence of Tc02v2_p015250.1

>Tc02v2_p015250.1 ID=Tc02v2_p015250.1|Name=Tc02v2_p015250.1|organism=Theobroma cacao|type=polypeptide|length=517bp
MDLRVDETSISKRLKQTQILLCDAMDIGQVEDPTTVLIGSEKAGVDSKGK
SKICYDKKWEDHVKDASASEQGNSVSVAGSEDSNNPLKSSTSGSINSNNL
NSSNSDISYHDDDNDCDEDCDDYADDVSDYGDNDDFLYDDDYSIMQSHFD
NVDLPPGVEASIPWLKDPAPIVNVPSGLGASTGPGPAESMKSTTSNLAGS
KVKSASTSTSIVPRESGSDQKEEGNEEHDVMQTFQSFKHFDVVDDFSDHH
YSNLTLSGEKQPKEWAKRIQDEWKILEKDLPDTIYVRVYEARMDLLRAVI
IGPSGTPYHDGLFVFDCFFPPKYPNEPPMVYYYSGGLRLNPNLYNCGKVC
LSLLGTWHGQQTEMWVPGQSTMLQVLVSIQALILNDRPFFNEPGYETSYV
GAEGDRRSRKYNEDVFVLSLKTMIYTLRRPPKHFEAFVAGHFRSRAHDIM
VACKAYKEGAKVGCVVVKDGVPDADKIEKGSSEDFKGTMQKMINLVVKEF
VKNGSTDCEQFQASRS*
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