Tc02v2_t014770.2

Overview
NameTc02v2_t014770.2
Unique NameTc02v2_t014770.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1527
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Productjasmonic acid-amido synthetase JAR1, transcript variant X2
NoteJasmonic acid-amido synthetase JAR1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608662
GenbankXM_018116297.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g014770Tc02v2_g014770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p014770.2Tc02v2_p014770.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto108965auto108965Theobroma cacaoexon
exon-auto108966auto108966Theobroma cacaoexon
exon-auto108967auto108967Theobroma cacaoexon
exon-auto108968auto108968Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto108969auto108969Theobroma cacaoCDS
CDS-auto108970auto108970Theobroma cacaoCDS
CDS-auto108971auto108971Theobroma cacaoCDS
CDS-auto108972auto108972Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t014770.2 ID=Tc02v2_t014770.2|Name=Tc02v2_t014770.2|organism=Theobroma cacao|type=mRNA|length=1527bp
ATGGAATATGAGGACTCTTGCGTTCGATTCACCACAAGAGACACCTCTCA
TTTGAAACAAAAGTTGAACTCCGGCACCACAGAAGGGAGACAGAAGTTCG
TACCCTTTACTCGCCATAGCTCCCAGACTACTTTGCAGATTTTTATGTTG
GCAGCAGCTTATAGATCAAGGGTTTATCCAATAAGAAACGGAGGAAGAAT
CTTGGAATTCATATATAGCAGTAAACAGTTCAAAACAAAGGGAGGGTTGA
CAGCAGGAACAGCAACAACCCACTATTACGCTAGTGAAGAGTTCAAGATC
AAACAGGAGAAGACAAAGTTATTCACTTGCAGCCCTGAAGAAGTCATTTC
TGGTGGAGACTACAAACAATCAACGTATTGCCATCTCCTACTTGGCCTCT
TCTTTTCCTATCAAGTAGAGTTCATCACCTCAACCTTCGCTTATAGCATA
GTCCAGGCCTTTGCCTCATTTGAAGAGCACTGGAAGGAAATCTGCAATGA
TATCAAAGAAGGCACTCTTAGCTCAAGAATAACCTTGCCGAGGATGCGAA
AAGCCGTGTTGGATATAATTTCTCCAAACCCATCTTTGGCTTCACAGATT
GAAGAAATTTGCGAGGAGTCACAAGCTTTAGACTGGTACAGTTTAATTCC
TAAGCTGTGGCCAAATGCAAAATATGTATACTCTATAATGACGGGCTCAA
TGCAACCGTACTCGAAAAAACTGAGGCATTATGCTGGTACCTTACCGCTA
GTGAGTGCTGAGTATGGGTCAACTGAGAGTTGGATTGGGGTGAATTTGGA
TCCTTCCTTGCACCCCAAGGATGTCACTTTTGCAGTAATACCCACTTTTT
CTTACTTCGAGTTTATACCCCTCTACAGACAGGAGCAAGATTGGACTTCA
GGCGCTGTTGATTTCATAGAAGATAAACCAGTGCCACTGTCCCAAGTCAA
GGTTGGACAAAAATATGAGATTGTCCTTACTACTTTTACTGGGCTTTATA
GATATCGGCTTGGAGATGTGGTGGAAGTGGCTGGATTCCATAACGGGACC
CCAAAGTTGAACTTCATATGCAGGAGAAAGCTAATTTTAACTGTTAACAT
TGACAAGAATACCGAAAAGGACCTTCAGCTAGTGGTCGAAAGAGGGTCTC
AGCTGCTGAGCAAGTATAGAGCGGAGCTGGTTGATTTCACGAGCTATGCC
GATGTGGTGCATCAACCAGGACACTACATAATTTACTGGGAGATCAAAGG
AGACGTGGAGGAGAGGGTGCTAGGCGAGTGCTGTCGCGAAATGGATGCTT
CTTTTGTGGATCACGGCTATGTTGTATCCAGAAGAACCAACTCGATTGGA
CCTTTGGAGCTTTGCATTGTTGAAAGAGGGACTTTCAAGAAGATTTTGGA
TCATTTCATAGGGAATGGAGCAGCACTTAGCCAATTCAAGACACCCAGGT
GCACCAGCAACCAAATGCTCCTTGCAATCCTTAATGTCTGCACCATTAAG
AGGTTCCGTAGCACAGCTTACAGTTAA
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protein sequence of Tc02v2_p014770.2

>Tc02v2_p014770.2 ID=Tc02v2_p014770.2|Name=Tc02v2_p014770.2|organism=Theobroma cacao|type=polypeptide|length=509bp
MEYEDSCVRFTTRDTSHLKQKLNSGTTEGRQKFVPFTRHSSQTTLQIFML
AAAYRSRVYPIRNGGRILEFIYSSKQFKTKGGLTAGTATTHYYASEEFKI
KQEKTKLFTCSPEEVISGGDYKQSTYCHLLLGLFFSYQVEFITSTFAYSI
VQAFASFEEHWKEICNDIKEGTLSSRITLPRMRKAVLDIISPNPSLASQI
EEICEESQALDWYSLIPKLWPNAKYVYSIMTGSMQPYSKKLRHYAGTLPL
VSAEYGSTESWIGVNLDPSLHPKDVTFAVIPTFSYFEFIPLYRQEQDWTS
GAVDFIEDKPVPLSQVKVGQKYEIVLTTFTGLYRYRLGDVVEVAGFHNGT
PKLNFICRRKLILTVNIDKNTEKDLQLVVERGSQLLSKYRAELVDFTSYA
DVVHQPGHYIIYWEIKGDVEERVLGECCREMDASFVDHGYVVSRRTNSIG
PLELCIVERGTFKKILDHFIGNGAALSQFKTPRCTSNQMLLAILNVCTIK
RFRSTAYS*
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