Tc02v2_t014260.1

Overview
NameTc02v2_t014260.1
Unique NameTc02v2_t014260.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length687
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 13 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcytochrome b6-f complex iron-sulfur subunit, chloroplastic
NoteCytochrome b6-f complex iron-sulfur subunit, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608589
GenbankXM_018116481.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g014260Tc02v2_g014260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p014260.1Tc02v2_p014260.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto108037auto108037Theobroma cacaoexon
exon-auto108038auto108038Theobroma cacaoexon
exon-auto108039auto108039Theobroma cacaoexon
exon-auto108040auto108040Theobroma cacaoexon
exon-auto108041auto108041Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto108042auto108042Theobroma cacaoCDS
CDS-auto108043auto108043Theobroma cacaoCDS
CDS-auto108044auto108044Theobroma cacaoCDS
CDS-auto108045auto108045Theobroma cacaoCDS
CDS-auto108046auto108046Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t014260.1 ID=Tc02v2_t014260.1|Name=Tc02v2_t014260.1|organism=Theobroma cacao|type=mRNA|length=687bp
ATGGCTTCCTCAACTCTCTCCCCTGCAGCTCCTTCGCAGCTATGCTCCAG
CAAGAGTGGCTTGTTCTGCCCATCACAAGCTCTGCTGGTGAAACCAACAA
GGACCCAGATGGTTAAAAAGGACAAGGGAATGAGACTCACATGCCAGGCC
ACCAGCATCCCCGCTGATGATAGAGTGCCAGACATGGGTAAGAGGCAACT
CATGAATCTGCTTCTGTTGGGGGCTGTTTCACTCCCCTCAGGTTTCATGT
TGGTTCCTTATGGGGCCTTCTTTGTCCCAGCTGGGGGGCGAGGTGCTGGT
GATGGTACCGTTGCCAAGGACGCAATTGGAAATGACGTCATTGCTGCCGA
ATGGCTTAAGACCCATGGCCCTGGAGACCGAACTCTGGCTCAAGGATTGA
AGGGAGATCCGACCTACCTAGTGGTGGAGAAAGACAAAACTCTTGCAACA
TATGGTATAAATGGCGTCTGCACACACCTTGGATGTGTTGTTCCATGGAA
TCAAGCTGAGAACAAATTCATATGCCCCTGCCATGGATCTCAGTACAACG
AACAAGGAAGAGTTGTGAGAGGACCTGCCCCCCTGTCCTTGGCATTGGCT
CATGCTGATGTGGATGATGGGAAGGTAGTCTTTGTTCCATGGGTCGAAAC
AGATTTCAGAACCGGTGAGGCTCCATGGTGGGCTTAA
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protein sequence of Tc02v2_p014260.1

>Tc02v2_p014260.1 ID=Tc02v2_p014260.1|Name=Tc02v2_p014260.1|organism=Theobroma cacao|type=polypeptide|length=229bp
MASSTLSPAAPSQLCSSKSGLFCPSQALLVKPTRTQMVKKDKGMRLTCQA
TSIPADDRVPDMGKRQLMNLLLLGAVSLPSGFMLVPYGAFFVPAGGRGAG
DGTVAKDAIGNDVIAAEWLKTHGPGDRTLAQGLKGDPTYLVVEKDKTLAT
YGINGVCTHLGCVVPWNQAENKFICPCHGSQYNEQGRVVRGPAPLSLALA
HADVDDGKVVFVPWVETDFRTGEAPWWA*
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