Tc02v2_t013910.1

Overview
NameTc02v2_t013910.1
Unique NameTc02v2_t013910.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1770
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productprobable terpene synthase 9
NoteProbable terpene synthase 9
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608546
GenbankXM_018115758.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013910Tc02v2_g013910Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013910.1Tc02v2_p013910.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto107533auto107533Theobroma cacaoexon
exon-auto107534auto107534Theobroma cacaoexon
exon-auto107535auto107535Theobroma cacaoexon
exon-auto107536auto107536Theobroma cacaoexon
exon-auto107537auto107537Theobroma cacaoexon
exon-auto107538auto107538Theobroma cacaoexon
exon-auto107539auto107539Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto107540auto107540Theobroma cacaoCDS
CDS-auto107541auto107541Theobroma cacaoCDS
CDS-auto107542auto107542Theobroma cacaoCDS
CDS-auto107543auto107543Theobroma cacaoCDS
CDS-auto107544auto107544Theobroma cacaoCDS
CDS-auto107545auto107545Theobroma cacaoCDS
CDS-auto107546auto107546Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013910.1 ID=Tc02v2_t013910.1|Name=Tc02v2_t013910.1|organism=Theobroma cacao|type=mRNA|length=1770bp
ATGAAAAAACTGATAGCTGCCCCTCCCTCCACTCTTCCTTGTTCTGCTGT
AATTGACTGCCACAGAAACTTGTTTTCACTATGGCTTACAACAGGAAGAA
AGCTAGGCCGATCAGGATTACTTCACTCTTTCACAATCAGTTCAAAGCCC
TGTTGCGTAGAAGCAAAGCAACGGCGATCAGCTAATTACCACCCTAGCAT
TTGGGACCCAAAAGTCATTGAATCCTTGACCACTCCATATTCGTATGAGT
TTCATGGTACTAAATTAAAGGAGTTGAAGAAAGAGGTTACAAGTTTGCTG
GCATTTGCCCCAGACCCTTGGGCTACATGGAAGCTAATCGACCTAATGCA
GCGTTTAGGTGTGGCCTACCATTTTGGCAAAGAGATTGATGAGGCTCTAA
ACAATGTCCTTAAAGAAACTGTAATCGGAGATCTTTATACAACTTCACTG
CTGTTCCGGATTCTACGTGAACATGCTTTTCCAATAAGCACAGACGTGTT
CAACAAATTCAGAGGTAGAGATGGGAAATTCGTGGACAGTTTACGAGGAG
ACATGGCAGGGCTTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGCAT
GGAGAAGATGTTATGGAAGAGGCCCAGAAATTCAGTGCAGAGCATCTCAA
GTCCTCATTGGGGAAGATAGGTAGTAATTTAGCTTTCCAAGTGCAACAGT
CCCTACAAGTTCCTTTACATTGGAAGATGCTCCGGATTGAGGCAAGGACT
TTCATAGATGTCTACCAAAAGGATGACTCGAAGAACTCAATTTTGATTGA
GCTAGCCAAGCTAGATTTCAATCTTGTGCAAGCAGTTCACCAGCAAGAAC
TCAAAGAGTTGGCGACGTGGTGGAGAGACTTAGGGTTTAAAGAGAAGATG
AGTTTTTCACGGGATCGATTGATGGAAAATTATATCTGGGCAATGGGAAT
CATCTTCGAGCCTCAATTCTCCAAATGCAGGATTTACCTCACCAGATTCG
TATGCATTTTAACCGCGATTGATGACATGTATGATGTATATGGAATGCTG
GATGAACTTGAACTCTTTACCAGAGCAGTAAATCAATGGGATATTGGGGC
CATGAAGGACCTTCCTGAATATATGAAGCCATGCTACTTAGCCTTGTTCA
ACTTTGTTAACGAATTGGGACATGATATCCTAATAGATCATGGATTGGAT
ATCACCCACTACATTAGGCAAGAGTGGAAAAAACTTTGTGCATCATATTT
AACTGAAGCGAGATGGTTTTACAACGGGCACACACCAGTCCTGGAGGAGT
ATTTAGAAAACGCATGGATCTCAGTGGGTGGCCCTGCAGCCATAGTTCAT
GCTTATATTTTACAAGCAGGCTCAATGACAGAAAAATCTCTTGATTATTG
CTTCAAGCATGGGGTTGAGCTAATATATTGGTCGTCCCTAATCACCCGAC
TTGCCGATGATTTGGGTACTTCCAAGGCCGAGAGTGCTAGAGGAGACGTG
GCAAAATCAACAGAGTGCTACATGATTGAAACAGGAGCGTCCAAAGAAGA
AGCAAGAGATCACATTAAGGAATTGATGGCTCATTCATGGAAAAAGTTAA
ATGAGGAAAGCTACAAAAATTTACTACCAAGATCCATGATAAACATGTGC
TTAAACATGGCACGCACTGCTCAGTGCATCTTCCAGCACGGAGATGGAAT
TGGAACATCAACCGGAGTGACAAAGGATCTTTTGATGTCACTCATTGCCG
AACCTATCACAGCTGAATAG
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protein sequence of Tc02v2_p013910.1

>Tc02v2_p013910.1 ID=Tc02v2_p013910.1|Name=Tc02v2_p013910.1|organism=Theobroma cacao|type=polypeptide|length=590bp
MKKLIAAPPSTLPCSAVIDCHRNLFSLWLTTGRKLGRSGLLHSFTISSKP
CCVEAKQRRSANYHPSIWDPKVIESLTTPYSYEFHGTKLKELKKEVTSLL
AFAPDPWATWKLIDLMQRLGVAYHFGKEIDEALNNVLKETVIGDLYTTSL
LFRILREHAFPISTDVFNKFRGRDGKFVDSLRGDMAGLLSLYEASHLGMH
GEDVMEEAQKFSAEHLKSSLGKIGSNLAFQVQQSLQVPLHWKMLRIEART
FIDVYQKDDSKNSILIELAKLDFNLVQAVHQQELKELATWWRDLGFKEKM
SFSRDRLMENYIWAMGIIFEPQFSKCRIYLTRFVCILTAIDDMYDVYGML
DELELFTRAVNQWDIGAMKDLPEYMKPCYLALFNFVNELGHDILIDHGLD
ITHYIRQEWKKLCASYLTEARWFYNGHTPVLEEYLENAWISVGGPAAIVH
AYILQAGSMTEKSLDYCFKHGVELIYWSSLITRLADDLGTSKAESARGDV
AKSTECYMIETGASKEEARDHIKELMAHSWKKLNEESYKNLLPRSMINMC
LNMARTAQCIFQHGDGIGTSTGVTKDLLMSLIAEPITAE*
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