Tc02v2_t013120.3

Overview
NameTc02v2_t013120.3
Unique NameTc02v2_t013120.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1152
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 16 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productprobable 3-hydroxyisobutyryl-CoA hydrolase 3, transcript variant X1
NoteProbable 3-hydroxyisobutyryl-CoA hydrolase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608468
GenbankXM_018115792.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013120Tc02v2_g013120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013120.3Tc02v2_p013120.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto105666auto105666Theobroma cacaoexon
exon-auto105667auto105667Theobroma cacaoexon
exon-auto105668auto105668Theobroma cacaoexon
exon-auto105669auto105669Theobroma cacaoexon
exon-auto105670auto105670Theobroma cacaoexon
exon-auto105671auto105671Theobroma cacaoexon
exon-auto105672auto105672Theobroma cacaoexon
exon-auto105673auto105673Theobroma cacaoexon
exon-auto105674auto105674Theobroma cacaoexon
exon-auto105675auto105675Theobroma cacaoexon
exon-auto105676auto105676Theobroma cacaoexon
exon-auto105677auto105677Theobroma cacaoexon
exon-auto105678auto105678Theobroma cacaoexon
exon-auto105679auto105679Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto105680auto105680Theobroma cacaoCDS
CDS-auto105681auto105681Theobroma cacaoCDS
CDS-auto105682auto105682Theobroma cacaoCDS
CDS-auto105683auto105683Theobroma cacaoCDS
CDS-auto105684auto105684Theobroma cacaoCDS
CDS-auto105685auto105685Theobroma cacaoCDS
CDS-auto105686auto105686Theobroma cacaoCDS
CDS-auto105687auto105687Theobroma cacaoCDS
CDS-auto105688auto105688Theobroma cacaoCDS
CDS-auto105689auto105689Theobroma cacaoCDS
CDS-auto105690auto105690Theobroma cacaoCDS
CDS-auto105691auto105691Theobroma cacaoCDS
CDS-auto105692auto105692Theobroma cacaoCDS
CDS-auto105693auto105693Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013120.3 ID=Tc02v2_t013120.3|Name=Tc02v2_t013120.3|organism=Theobroma cacao|type=mRNA|length=1152bp
ATGGCCCTCGCTTTCACCTTGGAAAGAGAGCACAATCAGGTACTATTCGA
GGGAGATTCATCAGCCAAGAAAGTGATTTTGAACAGACCAAAGAAGCTAA
ATGTTCTCAGTTATGAAATGATCTGTCAAATGCTAACCAACTTCCAAGCA
TATGAGCAAGATTCTACAACAAATTTCGTGATTTTGAAGAGCAATGGAAG
AGCATTTTGCGCCGGAGGCGATGTTGTGGCCGTACTTGGTGCTCTGATAA
TAGGTCATTGGAGTTTCGGAGCAAATTTTTACCGAAAGCAATATGCTTTA
GATTACTTACTCGCAACATATGAGAAGCCCTTGATTTCCCTTATCAACGG
TGTTGTTATGGGAGGTGGTGCTGGCTTATCTATGCATGCAAAGTTTAGAA
TTGTTACGGAGAATGCTGTGTTTGCCATGCCGGAAGCGTCAATAGGCCTT
TTCCCCGATGTTGGAGCGTCCTATTTTCTTTCTAGACTTCCAGGCTATTT
CGGAGAATATTTGGGACTAACTGGAGCAAGGTTGGATGGAATGGAAATGC
TTGCATGTGGACTTGCAACTCATTTCGTTTTGTCCAAGGACCTAGTTTTG
CTCGAAAATGAGCTTGATAAAGTGGGAACGTCAGACACAACAGAGATTGC
CAGACAAATTGAGAGATTCTCATGTGCAGCACCTATTAAACGAGAGAGTG
CTTATGCAAGATTGGACACTATAAACAAATGTTTCTCGAAGAATACGGTT
GAAGACATATTATTAGCGCTTGAGAAGGAAATGAAATATAAAGCAGAAAA
GTGGATAATCAAGGCAATAAAGTCTATGGAAGCTGCTAGTCCCACTAGCC
TTAAAATCTTTTTGAGATCAATCAGGAAAGGGCGAGAACAAACACTTGAA
CAATGTCTTAGTTTTGAGTATATAGTCGTATGTAACATTCTACGAGGATC
TATTAGCAAAGATTTTTGGGAGGGTGGAAGAGCGAAGCTAATTGAAAAAG
ACAATAAACCCAAGTGGGCGCCTTCAAATTTGCAGTCAGTTAGCGAAGAA
ACAGTAAATCGCTATTTTACTGAGGTTGATGATCCTCACTGGGAAATTCT
ACGTCTTCCTGATCGACCCAACTTGGTTGATGCTCTGAAATCCAAGATGT
GA
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protein sequence of Tc02v2_p013120.3

>Tc02v2_p013120.3 ID=Tc02v2_p013120.3|Name=Tc02v2_p013120.3|organism=Theobroma cacao|type=polypeptide|length=384bp
MALAFTLEREHNQVLFEGDSSAKKVILNRPKKLNVLSYEMICQMLTNFQA
YEQDSTTNFVILKSNGRAFCAGGDVVAVLGALIIGHWSFGANFYRKQYAL
DYLLATYEKPLISLINGVVMGGGAGLSMHAKFRIVTENAVFAMPEASIGL
FPDVGASYFLSRLPGYFGEYLGLTGARLDGMEMLACGLATHFVLSKDLVL
LENELDKVGTSDTTEIARQIERFSCAAPIKRESAYARLDTINKCFSKNTV
EDILLALEKEMKYKAEKWIIKAIKSMEAASPTSLKIFLRSIRKGREQTLE
QCLSFEYIVVCNILRGSISKDFWEGGRAKLIEKDNKPKWAPSNLQSVSEE
TVNRYFTEVDDPHWEILRLPDRPNLVDALKSKM*
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