Tc02v2_t013120.1

Overview
NameTc02v2_t013120.1
Unique NameTc02v2_t013120.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1131
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productprobable 3-hydroxyisobutyryl-CoA hydrolase 3, transcript variant X2
NoteProbable 3-hydroxyisobutyryl-CoA hydrolase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608468
GenbankXM_018115793.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013120Tc02v2_g013120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013120.1Tc02v2_p013120.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto105608auto105608Theobroma cacaoexon
exon-auto105609auto105609Theobroma cacaoexon
exon-auto105610auto105610Theobroma cacaoexon
exon-auto105611auto105611Theobroma cacaoexon
exon-auto105612auto105612Theobroma cacaoexon
exon-auto105613auto105613Theobroma cacaoexon
exon-auto105614auto105614Theobroma cacaoexon
exon-auto105615auto105615Theobroma cacaoexon
exon-auto105616auto105616Theobroma cacaoexon
exon-auto105617auto105617Theobroma cacaoexon
exon-auto105618auto105618Theobroma cacaoexon
exon-auto105619auto105619Theobroma cacaoexon
exon-auto105620auto105620Theobroma cacaoexon
exon-auto105621auto105621Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto105622auto105622Theobroma cacaoCDS
CDS-auto105623auto105623Theobroma cacaoCDS
CDS-auto105624auto105624Theobroma cacaoCDS
CDS-auto105625auto105625Theobroma cacaoCDS
CDS-auto105626auto105626Theobroma cacaoCDS
CDS-auto105627auto105627Theobroma cacaoCDS
CDS-auto105628auto105628Theobroma cacaoCDS
CDS-auto105629auto105629Theobroma cacaoCDS
CDS-auto105630auto105630Theobroma cacaoCDS
CDS-auto105631auto105631Theobroma cacaoCDS
CDS-auto105632auto105632Theobroma cacaoCDS
CDS-auto105633auto105633Theobroma cacaoCDS
CDS-auto105634auto105634Theobroma cacaoCDS
CDS-auto105635auto105635Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013120.1 ID=Tc02v2_t013120.1|Name=Tc02v2_t013120.1|organism=Theobroma cacao|type=mRNA|length=1131bp
ATGGCCCTCGCTTTCACCTTGGAAAGAGAGCACAATCAGGTACTATTCGA
GGGAGATTCATCAGCCAAGAAAGTGATTTTGAACAGACCAAAGAAGCTAA
ATGTTCTCAGTTATGAAATGATCTGTCAAATGCTAACCAACTTCCAAGCA
TATGAGCAAGATTCTACAACAAATTTCGTGATTTTGAAGAGCAATGGAAG
AGCATTTTGCGCCGGAGGCGATGTTGTGGCCGTACTTGGTGCTCTGATAA
TAGGTCATTGGAGTTTCGGAGCAAATTTTTACCGAAAGCAATATGCTTTA
GATTACTTACTCGCAACATATGAGAAGCCCTTGATTTCCCTTATCAACGG
TGTTGTTATGGGAGGTGGTGCTGGCTTATCTATGCATGCAAAGTTTAGAA
TTGTTACGGAGAATGCTGTGTTTGCCATGCCGGAAGCGTCAATAGGCCTT
TTCCCCGATGTTGGAGCGTCCTATTTTCTTTCTAGACTTCCAGGCTATTT
CGGAGAATATTTGGGACTAACTGGAGCAAGGTTGGATGGAATGGAAATGC
TTGCATGTGGACTTGCAACTCATTTCGTTTTGTCCAAGGACCTAGTTTTG
CTCGAAAATGAGCTTGATAAAGTGGGAACGTCAGACACAACAGAGATTGC
CAGACAAATTGAGAGATTCTCATGTGCAGCACCTATTAAACGAGAGAGTG
CTTATGCAAGATTGGACACTATAAACAAATGTTTCTCGAAGAATACGGTT
GAAGACATATTATTAGCGCTTGAGAAGGAAATGAAATATAAAGCAGAAAA
GTGGATAATCAAGGCAATAAAGTCTATGGAAGCTGCTAGTCCCACTAGCC
TTAAAATCTTTTTGAGATCAATCAGGAAAGGGCGAGAACAAACACTTGAA
CAATGTCTTAGTTTTGAGTATATAGTCGTATGTAACATTCTACGAGGATC
TATTAGCAAAGATTTTTGGGAGGGTGGAAGAGCGAAGCTAATTGAAAAAG
ACAATAAACCCAAGTCAGTTAGCGAAGAAACAGTAAATCGCTATTTTACT
GAGGTTGATGATCCTCACTGGGAAATTCTACGTCTTCCTGATCGACCCAA
CTTGGTTGATGCTCTGAAATCCAAGATGTGA
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protein sequence of Tc02v2_p013120.1

>Tc02v2_p013120.1 ID=Tc02v2_p013120.1|Name=Tc02v2_p013120.1|organism=Theobroma cacao|type=polypeptide|length=377bp
MALAFTLEREHNQVLFEGDSSAKKVILNRPKKLNVLSYEMICQMLTNFQA
YEQDSTTNFVILKSNGRAFCAGGDVVAVLGALIIGHWSFGANFYRKQYAL
DYLLATYEKPLISLINGVVMGGGAGLSMHAKFRIVTENAVFAMPEASIGL
FPDVGASYFLSRLPGYFGEYLGLTGARLDGMEMLACGLATHFVLSKDLVL
LENELDKVGTSDTTEIARQIERFSCAAPIKRESAYARLDTINKCFSKNTV
EDILLALEKEMKYKAEKWIIKAIKSMEAASPTSLKIFLRSIRKGREQTLE
QCLSFEYIVVCNILRGSISKDFWEGGRAKLIEKDNKPKSVSEETVNRYFT
EVDDPHWEILRLPDRPNLVDALKSKM*
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