Tc02v2_t013080.1

Overview
NameTc02v2_t013080.1
Unique NameTc02v2_t013080.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length669
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productprotein-S-isoprenylcysteine O-methyltransferase B, transcript variant X2
NoteProtein-S-isoprenylcysteine O-methyltransferase B
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608459
GenbankXM_007043176.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g013080Tc02v2_g013080Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p013080.1Tc02v2_p013080.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto105518auto105518Theobroma cacaoexon
exon-auto105519auto105519Theobroma cacaoexon
exon-auto105520auto105520Theobroma cacaoexon
exon-auto105521auto105521Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto105522auto105522Theobroma cacaoCDS
CDS-auto105523auto105523Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t013080.1 ID=Tc02v2_t013080.1|Name=Tc02v2_t013080.1|organism=Theobroma cacao|type=mRNA|length=669bp
ATGTCATGCTTAAAGCATCTCTGGGAAGATGTTGCAACTCAACTTTCAGT
GCTGCAAATGCCTGGCGTTTTATCTTTTGCAGAAACTTTAAGTTATACAG
CCTGCAGACAGTTATCTCAGATGTTCTTGGCAATAATTTTCTTTCATAGT
TCAGAATACATCCTAGCAATTGCCATTCATGGGAGATCAAATGTTACTTT
CAAATCATTTCTCATCAGCAAAAATTATCTTTCTGCTATGATCCTTTCAT
TGCTGGAGTACTTCCTTGAAATTGTTCTATTTCCTGGGTTGAAGGAACAC
TGGTGGATAAGTGACACAGGTCTTGCAATGGTGGTAATAGGGGAGATTAT
ACGAAAGTTGGCAATTATAACTGCTGGTCAAGCCTTCACGCATCTTATCA
AGGTTTACCACGAGGAGCATCATCAACTAATTACTCACGGAGTCTATAGA
TTTGTCCGTCATCCAGGGTACTCTGGTTTCCTCATTTGGTCAGTTGGCAC
TCAGATAATGCTCTGCAATCCCATATCCACAATCGCTTTTGCAATTGTTG
TTTGGCAATTCTTTGCAGAAAGAATACCTTATGAAGAGTTTTTCTTAAAG
CAGTTTTTTGGGTCAGACTATGAGGATTATGCACTTCGGGTCCCTTCTGG
GGTGCCATTTGTAAAATGA
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protein sequence of Tc02v2_p013080.1

>Tc02v2_p013080.1 ID=Tc02v2_p013080.1|Name=Tc02v2_p013080.1|organism=Theobroma cacao|type=polypeptide|length=223bp
MSCLKHLWEDVATQLSVLQMPGVLSFAETLSYTACRQLSQMFLAIIFFHS
SEYILAIAIHGRSNVTFKSFLISKNYLSAMILSLLEYFLEIVLFPGLKEH
WWISDTGLAMVVIGEIIRKLAIITAGQAFTHLIKVYHEEHHQLITHGVYR
FVRHPGYSGFLIWSVGTQIMLCNPISTIAFAIVVWQFFAERIPYEEFFLK
QFFGSDYEDYALRVPSGVPFVK*
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