Tc02v2_t012750.2

Overview
NameTc02v2_t012750.2
Unique NameTc02v2_t012750.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length990
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Productlipoyl synthase, chloroplastic, transcript variant X3
NoteLipoyl synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608423
GenbankXM_018115791.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g012750Tc02v2_g012750Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p012750.2Tc02v2_p012750.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto104868auto104868Theobroma cacaoexon
exon-auto104869auto104869Theobroma cacaoexon
exon-auto104870auto104870Theobroma cacaoexon
exon-auto104871auto104871Theobroma cacaoexon
exon-auto104872auto104872Theobroma cacaoexon
exon-auto104873auto104873Theobroma cacaoexon
exon-auto104874auto104874Theobroma cacaoexon
exon-auto104875auto104875Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto104876auto104876Theobroma cacaoCDS
CDS-auto104877auto104877Theobroma cacaoCDS
CDS-auto104878auto104878Theobroma cacaoCDS
CDS-auto104879auto104879Theobroma cacaoCDS
CDS-auto104880auto104880Theobroma cacaoCDS
CDS-auto104881auto104881Theobroma cacaoCDS
CDS-auto104882auto104882Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t012750.2 ID=Tc02v2_t012750.2|Name=Tc02v2_t012750.2|organism=Theobroma cacao|type=mRNA|length=990bp
ATGGAGTCGGACGCCAAAAACGGGCCATACCCAGGTGGGATGCCAAAGAT
GGGTCCCTTTACGGGCAGAGATCCTAACGTAAAGAAGCCGGAGTGGCTGA
GGCAGAAAGCTCCTCAGGGGCAGAGGTTCGATGACGTTAAACAATCTCTC
TCTCGGTTGAATCTCAATACTGTTTGTGAGGAAGCACAGTGCCCCAACAT
TGGAGAGTGTTGGAATGGAGGTGGGGATGGCATTGCAACTGCGACAATAA
TGTTGCTTGGGGACACTTGCACACGGGGTTGTCGGTTTTGTGCTGTTAAA
ACCAGTAGGAACCCGGCACCGCCTGACCCCATGGAACCTGAAAATACAGC
TAAGGCCATTGCGAGTTGGGGTGTGGATTATATTGTTCTGACTAGCGTAG
ATCGTGATGATTTACCTGATGGTGGAAGTGGACATTTTGCTGAGACGGTC
CAAGTGATGAAGAAACTCAAGCCAGAGATCATGGTTGAGTGTTTAACTTC
TGATTTCCGAGGTGATTTGAAAGCTGTAGACATTCTGGTACACTCAGGAT
TAGATGTCTTTGCTCACAACATTGAAACTGTGAAACGGCTCCAAAGAATT
GTCAGGGATCCTCGGGCTGGGTATGAGCAGAGCTTGTCAGTTCTAAGACA
TGCGAAGCTCAGCAAAGAAGGAATGATAACAAAATCTTCTATAATGCTTG
GCCTTGGAGAAACTGATGATGAGTTAAAGGAAGCCCTAGCTGATTTAAGG
GCTATAGATGTTGATATTCTCACACTTGGACAATATCTACAGCCTACACC
ACTCCATTTGACTGTCAAAGAATATGTTACACCTGAAAAGTTTGCTTTCT
GGAAGGAATATGGGGAGTTGATCGGATTTCGTTATGTAGCCAGTGGGCCC
TTGGTTCGATCCTCATATAGGGCAGGGGAGCTCTTTGTTAAGACCATGGT
GAAAGAAAGGGCGAACAACACTGCTGCTCCATCCAATTAA
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protein sequence of Tc02v2_p012750.2

>Tc02v2_p012750.2 ID=Tc02v2_p012750.2|Name=Tc02v2_p012750.2|organism=Theobroma cacao|type=polypeptide|length=330bp
MESDAKNGPYPGGMPKMGPFTGRDPNVKKPEWLRQKAPQGQRFDDVKQSL
SRLNLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVK
TSRNPAPPDPMEPENTAKAIASWGVDYIVLTSVDRDDLPDGGSGHFAETV
QVMKKLKPEIMVECLTSDFRGDLKAVDILVHSGLDVFAHNIETVKRLQRI
VRDPRAGYEQSLSVLRHAKLSKEGMITKSSIMLGLGETDDELKEALADLR
AIDVDILTLGQYLQPTPLHLTVKEYVTPEKFAFWKEYGELIGFRYVASGP
LVRSSYRAGELFVKTMVKERANNTAAPSN*
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