Tc02v2_t012610.3

Overview
NameTc02v2_t012610.3
Unique NameTc02v2_t012610.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length768
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Product3-isopropylmalate dehydratase small subunit 3, transcript variant X3
Note3-isopropylmalate dehydratase small subunit 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608410
GenbankXM_018115812.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g012610Tc02v2_g012610Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p012610.3Tc02v2_p012610.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto104383auto104383Theobroma cacaoexon
exon-auto104384auto104384Theobroma cacaoexon
exon-auto104385auto104385Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto104386auto104386Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t012610.3 ID=Tc02v2_t012610.3|Name=Tc02v2_t012610.3|organism=Theobroma cacao|type=mRNA|length=768bp
ATGGCTGCCTCTTTGTCTCAGGCGTTGTATCTAGCCACCTTCACCTCCTC
AGCATCAAAACCCTCCGCATCTCCTATCTCCCCTCCCTCTATCAAAGTCC
CCACCTTCTCCCCTTTGACTGTCCAACCACTCAGTTCTGCCTTCACTCCA
AATGTGGCACATGTTATCACCCTTACCCCACATGCCACCTCCACACCCTC
TTCTATTCCTTCTGACACCTCAACAACAACCTTCCATGGCCTCTGTTATG
TGGTTGGGGACAATATTGACACAGACCAAATAATTCCTGCAGAATACCTT
ACATTAGTTCCCTCGAACCCAGCTGAGTATGAGAAATTGGGCTCATATGC
TCTTATTGGCCTCCCTTCATCATATGCTACGCGTTTTATTGAACCAAATG
AGACCAAGACAAAATACTCCATTCTGATAGGTGGTGCTAACTTTGGTTGC
GGTTCCTCTCGCGAGCATGCACCTGTTGCCCTTGGGGCTGCTGGGGTGAA
GGCAGTGGTGGCTGAATCTTATGCAAGAATATTTTTCAGGAATTCTGTTG
CAACTGGGGAAGTTTATCCAGTAGAATCAGAAGTGAGAATATGTGAGGAA
TGTAAGACTGGGGATGTGGTGACAATTGAGTTGGGGGAGAGCCGGTTGAT
CAATCATACCACTGGTAAAGAGTATAAATTAAAGCCCATTGGGGATGCAG
GGCCGGTCATTGAGGCTGGAGGGATTTTTGCATATGCAAGGAAAACAGGA
ATGATTCCATCTCAGTGA
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protein sequence of Tc02v2_p012610.3

>Tc02v2_p012610.3 ID=Tc02v2_p012610.3|Name=Tc02v2_p012610.3|organism=Theobroma cacao|type=polypeptide|length=256bp
MAASLSQALYLATFTSSASKPSASPISPPSIKVPTFSPLTVQPLSSAFTP
NVAHVITLTPHATSTPSSIPSDTSTTTFHGLCYVVGDNIDTDQIIPAEYL
TLVPSNPAEYEKLGSYALIGLPSSYATRFIEPNETKTKYSILIGGANFGC
GSSREHAPVALGAAGVKAVVAESYARIFFRNSVATGEVYPVESEVRICEE
CKTGDVVTIELGESRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKTG
MIPSQ*
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