Tc02v2_t012330.1

Overview
NameTc02v2_t012330.1
Unique NameTc02v2_t012330.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1290
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productexopolygalacturonase, transcript variant X1
NotePutative Exopolygalacturonase (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608380
GenbankXM_018115353.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g012330Tc02v2_g012330Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p012330.1Tc02v2_p012330.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto103757auto103757Theobroma cacaoexon
exon-auto103758auto103758Theobroma cacaoexon
exon-auto103759auto103759Theobroma cacaoexon
exon-auto103760auto103760Theobroma cacaoexon
exon-auto103761auto103761Theobroma cacaoexon
exon-auto103762auto103762Theobroma cacaoexon
exon-auto103763auto103763Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto103764auto103764Theobroma cacaoCDS
CDS-auto103765auto103765Theobroma cacaoCDS
CDS-auto103766auto103766Theobroma cacaoCDS
CDS-auto103767auto103767Theobroma cacaoCDS
CDS-auto103768auto103768Theobroma cacaoCDS
CDS-auto103769auto103769Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t012330.1 ID=Tc02v2_t012330.1|Name=Tc02v2_t012330.1|organism=Theobroma cacao|type=mRNA|length=1290bp
ATGAGCCTTGATACTCACACCAAGTTGCTATTGGTGCTTTCATTGTTTTG
TTTCAATGTTGTTTTTGCTGGGGAAAGTGGAGCAAGAAGTGCAGATTTAG
GAATGGAAGGCTTTGAACAACATGGAAGGGGGCTTGGGTTATCACATTAC
AAGGGAAGGAGCTCTCATTTATTCAATGTCAAGAGCTTTGGTGCTCGGGC
CGATGGACTGACTGATGACAGCAAAGCCTTCAGAGCAGCATGGAAGAAAG
CATGTCAGGCTACAGGTGAGGTAGACCTTGTGATTCCAAGAGGGACATAC
TTGGTTGGCCCTGTCAAATTCGCAGGCCCCTGCACAAATGTGTCTAAAAT
AACAGTTCGTGTGAAGGGTTATCTGAAGGCAACAACAAACTTGTCTCAAT
ATGGATATAGTGCTGGTTGGGTTGAATTCAAATGGGTGGAGGGGCTAATT
TTGACTGGAGGAGGGACTTTTGATGGGCAGGGTGCCAAAGCATGGCCTTA
CAATAGGTGCCCCACTGACTTTAACTGCAAACTTCTTCCAACTAATGTCA
AATTTGTGGGGACGAATAGGACGGTTGTAAGAAGCATAACTTCAGTAAAT
AGCAAGTTCTTTCATATGGCTCTTGTCGAATGCAAGAACTTCAAGGGCAG
TAAAATCAAGATTTCAGCCCCAGCAGATAGCCCTAACACAGATGGGATCC
ATATCGAACGAAGCTCTAGCGTACACTTTTCACGATCACTTATAGGTACA
GGTGATGACTGCATATCTATTGGACAAGGAAATTCTCAGGTCACCATCAC
AAGCATCAGCTGCGGGCCAGGTCATGGCATCAGCGTTGGAAGTCTGGGAA
GATATAGGAATGAAGGTGATGTAAGTGGATTAGTGGTTAGAGACTGCACA
ATTACAGGGACCACGAATGGGATTAGGATCAAGACATGGGCTAACTCTCC
AGACAGAAGTGCTGCCACCAATATGACATTCGAAAACATCAACATGAACA
ATGTGACCAATCCGATTATAATCGATCAGGCATATTGTCCATTCACATCT
TGCACCCCAATGGGAACATCTCAAGTGAAACTAAGTGACATATATTTCAA
GAAAATAAAGGGAACATCATCATCTGCAGTGGCGGTAACACTAGAATGTA
GCAAAGGGATCCCATGCCAGGATATTTACCTTGAAGATGTTCACTTGGAC
CTGGCATCAGGGGAGAAACAAGCGACTTCCACTTGTAAAAATGTCAGGGC
TAAATACATTGGCACCCAAATCCCACCACCATGTGCTTAG
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protein sequence of Tc02v2_p012330.1

>Tc02v2_p012330.1 ID=Tc02v2_p012330.1|Name=Tc02v2_p012330.1|organism=Theobroma cacao|type=polypeptide|length=430bp
MSLDTHTKLLLVLSLFCFNVVFAGESGARSADLGMEGFEQHGRGLGLSHY
KGRSSHLFNVKSFGARADGLTDDSKAFRAAWKKACQATGEVDLVIPRGTY
LVGPVKFAGPCTNVSKITVRVKGYLKATTNLSQYGYSAGWVEFKWVEGLI
LTGGGTFDGQGAKAWPYNRCPTDFNCKLLPTNVKFVGTNRTVVRSITSVN
SKFFHMALVECKNFKGSKIKISAPADSPNTDGIHIERSSSVHFSRSLIGT
GDDCISIGQGNSQVTITSISCGPGHGISVGSLGRYRNEGDVSGLVVRDCT
ITGTTNGIRIKTWANSPDRSAATNMTFENINMNNVTNPIIIDQAYCPFTS
CTPMGTSQVKLSDIYFKKIKGTSSSAVAVTLECSKGIPCQDIYLEDVHLD
LASGEKQATSTCKNVRAKYIGTQIPPPCA*
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