Tc02v2_t011200.1

Overview
NameTc02v2_t011200.1
Unique NameTc02v2_t011200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1548
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productphospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic
NotePhospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608260
GenbankXM_007042849.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g011200Tc02v2_g011200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p011200.1Tc02v2_p011200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto101513auto101513Theobroma cacaoexon
exon-auto101514auto101514Theobroma cacaoexon
exon-auto101515auto101515Theobroma cacaoexon
exon-auto101516auto101516Theobroma cacaoexon
exon-auto101517auto101517Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto101518auto101518Theobroma cacaoCDS
CDS-auto101519auto101519Theobroma cacaoCDS
CDS-auto101520auto101520Theobroma cacaoCDS
CDS-auto101521auto101521Theobroma cacaoCDS
CDS-auto101522auto101522Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t011200.1 ID=Tc02v2_t011200.1|Name=Tc02v2_t011200.1|organism=Theobroma cacao|type=mRNA|length=1548bp
ATGGCTCTGACATCCCCATCTCTGCTCTCCTCCAAATCTCCTCTTCTCCC
CCGCCACCATTATTATTGCCACTCTCTCCTCCCCGCCAAACTCAAACCCA
TCACAGCCATCCATTCCGCCGACCCAGCCAAGTCAACCATATCAACGGCG
GCCTCGACCACCTCCCCATCAATCCCCATTAAATGGAGCCTTGACAGCTG
GAAGTCCAAGAAGGCTCTCCAGCTTCCTGAATACCCGGATCAAAACGACC
TCGTCTCTGTCCTCCAGACGCTGTCTTCGTTCCCTCCAATCGTGTTTGCT
GGGGAGGCAAGGAGCCTTGAAGAGAAGCTTGGACAGGCTGCTTTTGGCAA
TGCTTTCCTGCTACAAGGTGGTGACTGTGCGGAGAGCTTCAAGGAGTTCA
ATGCTAATAACATTCGTGACACTTTCAGGGTCCTTCTCCAGATGGGTGTC
GTCCTCATGTTTGGTGGCCAAATGCCTGTTATCAAGGTGGGAAGAATGGC
AGGTCAGTTTGCAAAGCCAAGATCAGATCCCTTCGAGGAGAAGAATGGGG
TGAAGCTCCCAAGCTATAGAGGTGACAATATAAATGGTGATTCTTTTGAT
GAGAAAGCGAGGGTTCCAGATCCCCATAGGATGATCAGGGCCTATTGCCA
ATCCGTGGCAACTTTGAACCTTTTGCGGGCATTTGCTACTGGAGGGTATG
CAGCCATGCAGAGAGTCTCACAATGGAATCTAGACTTTACAGAGAACAGT
GAGCAGGGGGACAGGTACCGTGAACTGGCTCACCGAGTTGATGAGGCTAT
GGGGTTCATGGCTGCTGCTGGACTCACAGTTGGTCACCCTATCATGACAA
CTACAGAGTTTTGGACGTCTCATGAGTGCTTGCTCCTGCCTTATGAGCAG
GCACTCACTAGGGAGGATTCAACCTCTGGGCTTTACTATGACTGCTCTGC
TCACATGCTTTGGGTTGGGGAGCGCACCCGCCAGCTTGATGGTGCTCCTG
TTGAATTTTTAAGGGGAGTTGCTAATCCTCTGGGCATAAAGGTTAGTGAT
AAGATGGATCCTAATGAGCTAGTTAGGCTCATTGAAATTCTAAATCCTCA
GAACAAGCCTGGTAGGATAACTGTCATTGTAAGGATGGGAGCTGAGAACA
TGAGAGTGAAACTTCCCCATTTGATCAGGGCTGTCCGCAGAGCTGGGCAG
ATTGTAACTTGGGTTAGCGACCCCATGCATGGGAACACTACTAAAGCTCC
TTGTGGACTGAAAACTCGTTCCTTTGATGCAATTAGGGCTGAGGTGAGAG
CATTCTTTGATGTGCATGATCAAGAAGGTAGCTATCCTGGAGGAGTTCAT
TTAGAGATGACAGGGCAGAATGTGACAGAATGCGTTGGAGGCTCAAGAAC
TATAACCTATAATGATCTGAGTTCACGCTATCACACCCATTGTGATCCAA
GGCTTAATGCTTCTCAATCTCTAGAGCTTGCCTTCATTATTGGAGAGCGG
CTAAGAAAAAGAAGGCTTGCATCACGGCACCCTCTGGCCTCCAATTGA
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protein sequence of Tc02v2_p011200.1

>Tc02v2_p011200.1 ID=Tc02v2_p011200.1|Name=Tc02v2_p011200.1|organism=Theobroma cacao|type=polypeptide|length=516bp
MALTSPSLLSSKSPLLPRHHYYCHSLLPAKLKPITAIHSADPAKSTISTA
ASTTSPSIPIKWSLDSWKSKKALQLPEYPDQNDLVSVLQTLSSFPPIVFA
GEARSLEEKLGQAAFGNAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGV
VLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNINGDSFD
EKARVPDPHRMIRAYCQSVATLNLLRAFATGGYAAMQRVSQWNLDFTENS
EQGDRYRELAHRVDEAMGFMAAAGLTVGHPIMTTTEFWTSHECLLLPYEQ
ALTREDSTSGLYYDCSAHMLWVGERTRQLDGAPVEFLRGVANPLGIKVSD
KMDPNELVRLIEILNPQNKPGRITVIVRMGAENMRVKLPHLIRAVRRAGQ
IVTWVSDPMHGNTTKAPCGLKTRSFDAIRAEVRAFFDVHDQEGSYPGGVH
LEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIGER
LRKRRLASRHPLASN*
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