Tc02v2_t010500.2

Overview
NameTc02v2_t010500.2
Unique NameTc02v2_t010500.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1389
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Productphosphatidylinositol glycan anchor biosynthesis class U protein, transcript variant X2
NoteGPI transamidase subunit PIG-U isoform 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608187
GenbankXM_007042746.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g010500Tc02v2_g010500Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p010500.2Tc02v2_p010500.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto100071auto100071Theobroma cacaoexon
exon-auto100072auto100072Theobroma cacaoexon
exon-auto100073auto100073Theobroma cacaoexon
exon-auto100074auto100074Theobroma cacaoexon
exon-auto100075auto100075Theobroma cacaoexon
exon-auto100076auto100076Theobroma cacaoexon
exon-auto100077auto100077Theobroma cacaoexon
exon-auto100078auto100078Theobroma cacaoexon
exon-auto100079auto100079Theobroma cacaoexon
exon-auto100080auto100080Theobroma cacaoexon
exon-auto100081auto100081Theobroma cacaoexon
exon-auto100082auto100082Theobroma cacaoexon
exon-auto100083auto100083Theobroma cacaoexon
exon-auto100084auto100084Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto100085auto100085Theobroma cacaoCDS
CDS-auto100086auto100086Theobroma cacaoCDS
CDS-auto100087auto100087Theobroma cacaoCDS
CDS-auto100088auto100088Theobroma cacaoCDS
CDS-auto100089auto100089Theobroma cacaoCDS
CDS-auto100090auto100090Theobroma cacaoCDS
CDS-auto100091auto100091Theobroma cacaoCDS
CDS-auto100092auto100092Theobroma cacaoCDS
CDS-auto100093auto100093Theobroma cacaoCDS
CDS-auto100094auto100094Theobroma cacaoCDS
CDS-auto100095auto100095Theobroma cacaoCDS
CDS-auto100096auto100096Theobroma cacaoCDS
CDS-auto100097auto100097Theobroma cacaoCDS
CDS-auto100098auto100098Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t010500.2 ID=Tc02v2_t010500.2|Name=Tc02v2_t010500.2|organism=Theobroma cacao|type=mRNA|length=1389bp
ATGCAGAAAATGGGGAAGCAGAAGAATAAAACGGCATCGTTTTCATTTTG
GAATTGGGTGATAGCATCTATCATCTTCAGACTGATTCTAATTTACTTCC
CCAAAAACCTGAACCTAGCTTCTCGCCCCGAAGTCTCCACTCCTCTAACC
AGCTTCCGTCGCCTCGCTGAAGGTTACTGGCTAAAGCAGTTATCCATGTC
CCCTTACGCAGGATCTATGTACCACGGTTCCCCTTTGTTATTGTCACTTC
TCGGACCGCTTACCGTTAAGAGAATTGAAGGACAGCCTAATCATCTCTTG
TACAGTTTGGTTTCTGTGATTGCAGATGTTGTTAGTGCAATTCTTATTCG
TGCTACTGGAAAGAATCTTCGGCTTGCTTATCTTCGTAGTTTGGAATCAT
TAGACATTGTTAAACAAACCAAAGCTTCAGAGATCCTTTCTCCCGGAGAT
GCTGCTGCTCTTATCTACTTATGGAATCCTTTCACGATAGTTGCATGTGT
GGGCTTGTCAACATCGCCAATTGAAAATATGGCTGTCATATTGTGCCTTT
ATGGAGCATGTTCACGACTAGTTCCCTTGGCCGCTTTTGGATGGGTCATC
GCAACTCATTTGTCTCTTTACCCTGCTATTCTGATTATTCCGGTGATCTT
TTTATTAGGATGCGGTCCAGATGCCCCTCCTAGGAAATTGTTTTTGCAAA
AGAATGATAAAGAGGAAGTGTTGAACAAGTCAAAGCTCCCTCTTGGCTTC
TCATGGAGGCCAATCACTCATTTTGCATTTTGGGCTCTTCTGTGGTCAGC
CTATGTGTTGGTTCTGTGTGGCATTTCTTTGAAACAGTTTGGTGGCCTAT
GGGAAATGTTTAAAAGTACATATGGGTTCATCCTCACTGTGGAAGATTTG
TCTCCTAATATAGGCGTTTTATGGTACTTCTTTGCTGAAGTTTTTGACTT
CTTCAGGAACTTCTTTTTAATAGTTTTCCATGTGAATATTCTATTTATGA
TAATGCCATTAGCCATACGGCTTAACCACCGGCCCTGCTTCCTGGCTTTT
GTATACATTGCCATATTTTCCATGCTGAAGTCTTACCCATCAGTTGGAGA
TTCAGCACTGTACTTGGGTTTATTGGGTTGGTTTGTCAACGAATTAGCAG
ATATACAATTCTCTTTCTTCCTCTTCTGTGGATATGTTGGAGTTTCTCTT
CTTAGCCCTGTCATGCACACCCTATGGATATGGAGGGGCACTGGCAATGC
AAACTTCTACTTTGCAACTGCTATGGTTTATGCTTGCTTGCAGATTATCT
TGGTTGTCGAGGGTGTAAGTGCCATGCTAAACCATGACAGAAAGTTGAGA
AACCTAACCACCAGCAAGCCCCAAGATGCCAAATCTTAG
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protein sequence of Tc02v2_p010500.2

>Tc02v2_p010500.2 ID=Tc02v2_p010500.2|Name=Tc02v2_p010500.2|organism=Theobroma cacao|type=polypeptide|length=463bp
MQKMGKQKNKTASFSFWNWVIASIIFRLILIYFPKNLNLASRPEVSTPLT
SFRRLAEGYWLKQLSMSPYAGSMYHGSPLLLSLLGPLTVKRIEGQPNHLL
YSLVSVIADVVSAILIRATGKNLRLAYLRSLESLDIVKQTKASEILSPGD
AAALIYLWNPFTIVACVGLSTSPIENMAVILCLYGACSRLVPLAAFGWVI
ATHLSLYPAILIIPVIFLLGCGPDAPPRKLFLQKNDKEEVLNKSKLPLGF
SWRPITHFAFWALLWSAYVLVLCGISLKQFGGLWEMFKSTYGFILTVEDL
SPNIGVLWYFFAEVFDFFRNFFLIVFHVNILFMIMPLAIRLNHRPCFLAF
VYIAIFSMLKSYPSVGDSALYLGLLGWFVNELADIQFSFFLFCGYVGVSL
LSPVMHTLWIWRGTGNANFYFATAMVYACLQIILVVEGVSAMLNHDRKLR
NLTTSKPQDAKS*
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