Tc02v2_t010240.1

Overview
NameTc02v2_t010240.1
Unique NameTc02v2_t010240.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length768
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productdehydrodolichyl diphosphate synthase complex subunit NUS1
NoteUndecaprenyl pyrophosphate synthetase family protein, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608157
GenbankXM_018116093.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g010240Tc02v2_g010240Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p010240.1Tc02v2_p010240.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto99387auto99387Theobroma cacaoexon
exon-auto99388auto99388Theobroma cacaoexon
exon-auto99389auto99389Theobroma cacaoexon
exon-auto99390auto99390Theobroma cacaoexon
exon-auto99391auto99391Theobroma cacaoexon
exon-auto99392auto99392Theobroma cacaoexon
exon-auto99393auto99393Theobroma cacaoexon
exon-auto99394auto99394Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto99395auto99395Theobroma cacaoCDS
CDS-auto99396auto99396Theobroma cacaoCDS
CDS-auto99397auto99397Theobroma cacaoCDS
CDS-auto99398auto99398Theobroma cacaoCDS
CDS-auto99399auto99399Theobroma cacaoCDS
CDS-auto99400auto99400Theobroma cacaoCDS
CDS-auto99401auto99401Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t010240.1 ID=Tc02v2_t010240.1|Name=Tc02v2_t010240.1|organism=Theobroma cacao|type=mRNA|length=768bp
ATGGATTTCAAGAAGGAAACGCGGATCTTGTATTGCTGGATAGCTCAAAT
TGGAAATCTTCTACTTCGATCACTGTGGCGTCTCATACATGTTATTATCA
ACTTATGCTACTTAACACTGGGTATAGCTAAAGCGTTTGAAAGCTATCTT
ATCTCTTGGGGAATACTGAGGAGATACAAATCCCTCCAAGTCGCCAAGCT
CCGGTATCTGGCTATTGTGGTAGAAAGTAAAGATGCTTGCCAAACTTCAA
AAATTATTGAGCTTTTGCAATGGTTGGCAGATGTCGGAGTAAAACATGTT
TGCCTTTATGATATGGAAGGAATACTGAAGAAATCAAAGGACTTCATCTT
GGAAGAGTTGGATGGTGCAATATTGTTTGGGGAAGCTTATGAAAATAATG
AGATACCAGACCAAGCACAGATGACTCTGGAGTTTGCATCATTTTCTGAT
GGGAAAGAAGCAGTGGCCAAAGCAGCCAATGTACTTTTTATGAAGTACTT
AAAATCAGGTGCCACTGACCAAAATCAGGAAGAGGCAATCTTCACTGAAT
CTCAAATGGCTGAGGCACTCAAAACTGTTGGCAGTGGAGGGCCAGAACCT
GATCTTTTATTAGTATATGGACCTGCCAGGTGCCATTTAGGTTTCCCTGC
CTGGAGAATGCGATATACTGAGATTATACATATGGGACCCTTGAAGTCCA
TGAAGTATGGGTCCCTAATTAAGGCCATTTACAAATTCACGATGGTGCGG
CAAAACTATGGTAAATGA
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protein sequence of Tc02v2_p010240.1

>Tc02v2_p010240.1 ID=Tc02v2_p010240.1|Name=Tc02v2_p010240.1|organism=Theobroma cacao|type=polypeptide|length=256bp
MDFKKETRILYCWIAQIGNLLLRSLWRLIHVIINLCYLTLGIAKAFESYL
ISWGILRRYKSLQVAKLRYLAIVVESKDACQTSKIIELLQWLADVGVKHV
CLYDMEGILKKSKDFILEELDGAILFGEAYENNEIPDQAQMTLEFASFSD
GKEAVAKAANVLFMKYLKSGATDQNQEEAIFTESQMAEALKTVGSGGPEP
DLLLVYGPARCHLGFPAWRMRYTEIIHMGPLKSMKYGSLIKAIYKFTMVR
QNYGK*
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