Tc02v2_t010090.1

Overview
NameTc02v2_t010090.1
Unique NameTc02v2_t010090.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length552
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
ProductNEDD8-conjugating enzyme Ubc12, transcript variant X2
NoteNEDD8-conjugating enzyme Ubc12
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608142
GenbankXM_007042669.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g010090Tc02v2_g010090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p010090.1Tc02v2_p010090.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto99000auto99000Theobroma cacaoexon
exon-auto99001auto99001Theobroma cacaoexon
exon-auto99002auto99002Theobroma cacaoexon
exon-auto99003auto99003Theobroma cacaoexon
exon-auto99004auto99004Theobroma cacaoexon
exon-auto99005auto99005Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto99006auto99006Theobroma cacaoCDS
CDS-auto99007auto99007Theobroma cacaoCDS
CDS-auto99008auto99008Theobroma cacaoCDS
CDS-auto99009auto99009Theobroma cacaoCDS
CDS-auto99010auto99010Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t010090.1 ID=Tc02v2_t010090.1|Name=Tc02v2_t010090.1|organism=Theobroma cacao|type=mRNA|length=552bp
ATGATCAAGCTATTTAAAGTCAAGGAAAAGCAGAGGGAAATTGCAGAAAA
TGCCAATGGGAAGGCCCCTGTAAAGAAGCAAAGTGCCGGAGAATTACGCC
TTCATAAAGATATCAGCGAACTGAATCTACCAAAAACATGTAGCATTTCA
TTTCCCAATGGCAAAGATGACTTGATGAACTTCGAAGTTACCATTCGGCC
TGATGAAGGTTATTATCTAGGTGGCACTTTTTTATTCTCTTTCCAAGTTT
CCCCCATCTACCCCCATGAGGCACCTAAGGTCAAATGCAAGACAAAGGTG
TACCACCCTAACATTGATTTGGAAGGAAATGTTTGCCTCAACATTCTAAG
AGAAGATTGGAAACCTGTTCTGAACATAAACACCATTATTTATGGATTGT
TTCATCTCTTCACGCAACCCAACTATGAGGATCCTCTCAATCACGATGCA
GCAGCTGTTTTGAGGGACAACCCCAAACTGTTCGAGTCCAATGTGAGAAG
AGCGATGGCCGGTGGATATGTGGGCCAAACCTTCTTCACACGGTGTATGT
AG
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protein sequence of Tc02v2_p010090.1

>Tc02v2_p010090.1 ID=Tc02v2_p010090.1|Name=Tc02v2_p010090.1|organism=Theobroma cacao|type=polypeptide|length=184bp
MIKLFKVKEKQREIAENANGKAPVKKQSAGELRLHKDISELNLPKTCSIS
FPNGKDDLMNFEVTIRPDEGYYLGGTFLFSFQVSPIYPHEAPKVKCKTKV
YHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHDA
AAVLRDNPKLFESNVRRAMAGGYVGQTFFTRCM*
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