Tc02v2_t010000.1

Overview
NameTc02v2_t010000.1
Unique NameTc02v2_t010000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1389
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 18 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic
Note4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608131
GenbankXM_007042655.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g010000Tc02v2_g010000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p010000.1Tc02v2_p010000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto98823auto98823Theobroma cacaoexon
exon-auto98824auto98824Theobroma cacaoexon
exon-auto98825auto98825Theobroma cacaoexon
exon-auto98826auto98826Theobroma cacaoexon
exon-auto98827auto98827Theobroma cacaoexon
exon-auto98828auto98828Theobroma cacaoexon
exon-auto98829auto98829Theobroma cacaoexon
exon-auto98830auto98830Theobroma cacaoexon
exon-auto98831auto98831Theobroma cacaoexon
exon-auto98832auto98832Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto98833auto98833Theobroma cacaoCDS
CDS-auto98834auto98834Theobroma cacaoCDS
CDS-auto98835auto98835Theobroma cacaoCDS
CDS-auto98836auto98836Theobroma cacaoCDS
CDS-auto98837auto98837Theobroma cacaoCDS
CDS-auto98838auto98838Theobroma cacaoCDS
CDS-auto98839auto98839Theobroma cacaoCDS
CDS-auto98840auto98840Theobroma cacaoCDS
CDS-auto98841auto98841Theobroma cacaoCDS
CDS-auto98842auto98842Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t010000.1 ID=Tc02v2_t010000.1|Name=Tc02v2_t010000.1|organism=Theobroma cacao|type=mRNA|length=1389bp
ATGGCGACTTCTCTGCAACTATGTCGTTTCTGCATCCGCACCGGTTCCGA
TCATTTTGGAGGAAGACCCGGAGCTCTCCCTTTCCGGAAGCCTCTCACTG
TTAGATGCTCCGGCGATTCTACTTCTTCTTCTTCCATAGCTGTGGATCCC
GATAACTTCGATGCCAAGGCTTTTCGACATAACTTGACGAGGAGCAAGAA
TTATAATCGGAAAGGATTCGGACACAAAGAAGAGACTCTCGAGCTCATGA
ATCGAGAGTACACTAGTGATATTATTAAGAAATTGAAGGAAAATGGAAAC
GAGTATACATGGGGAAACGTTACTGTGAAATTGGCAGAAGCATATGGTTT
TTGCTGGGGGGTCGAGAGAGCTGTCCAGATTGCTTATGAAGCGAGAAAAC
AGTTTGCAACCGAGAAAATTTGGATTACCAATGAAATTATCCACAATCCA
ACTGTTAATAAGCGGTTGGAGGAGATGGAAGTTAAAAACATTCCTGTTGA
GGAAGGGAAGAAACAGTTTGATGTAGTGAATAAGGGTGATGTTGTGGTTT
TGCCTGCTTTTGGAGCTGCAGTAGATGAGATGTTGGTTTTGAATGAAAAA
AGCGTGCAAATTGTTGATACAACTTGTCCTTGGGTTAGTAAGGTATGGAA
CACTGTAGAGAAGCACAAGAAAGGTGACTACACTTCGATAATTCATGGTA
AATATGCTCATGAGGAGACAGTAGCAACTGCATCTTTTGCTGGAACATAT
ATCATTGTGAAGGATATGACTGAGGCAATGTATGTTTGTGATTACATTCT
TGGAGGTAAACTTGATGGATCTAGCTCGACCAAAGAGGCATTTTTGGAGA
AATTTAAATATGCAACTTCAAAGGGATTCGATCCAGAATGCGACTTAGTG
AAACTTGGCATTGCAAATCAAACTACAATGCTGAAGGGAGAGACAGAGGA
AATTGGAAAATTAGTAGAAAGGACAATGATGCGAAAGTATGGAGTGGAAA
ATGTCAATGATCACTTCCTAAGCTTTAATACAATTTGTGATGCAACACAA
GAGCGACAAGATGCAATGTATAAGTTGGTTGATGAAAATGTGGATCTTAT
GTTAGTAGTTGGCGGTTGGAACTCAAGCAACACGTCACACCTTCAAGAAA
TTTCAGAGGACCGTGGGATCCCCTCATATTGGATTGACAGTGAACAGAGA
ATAGGTCCTGGAAACAGAGTAGCTCACAAATTGAAACACGGGGAGCTGGT
TGAGACAGAAAACTGGCTACCAGAGGGTCCCATCACAATTGGTGTTACAT
CTGGTGCCTCCACACCAGATAAGGTTGTTGAAGATGCCCTTATCAAGGTG
TTTGACATAAAACGCGAAGAAGCCTTGCAAGTAGCATAA
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protein sequence of Tc02v2_p010000.1

>Tc02v2_p010000.1 ID=Tc02v2_p010000.1|Name=Tc02v2_p010000.1|organism=Theobroma cacao|type=polypeptide|length=463bp
MATSLQLCRFCIRTGSDHFGGRPGALPFRKPLTVRCSGDSTSSSSIAVDP
DNFDAKAFRHNLTRSKNYNRKGFGHKEETLELMNREYTSDIIKKLKENGN
EYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFATEKIWITNEIIHNP
TVNKRLEEMEVKNIPVEEGKKQFDVVNKGDVVVLPAFGAAVDEMLVLNEK
SVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYAHEETVATASFAGTY
IIVKDMTEAMYVCDYILGGKLDGSSSTKEAFLEKFKYATSKGFDPECDLV
KLGIANQTTMLKGETEEIGKLVERTMMRKYGVENVNDHFLSFNTICDATQ
ERQDAMYKLVDENVDLMLVVGGWNSSNTSHLQEISEDRGIPSYWIDSEQR
IGPGNRVAHKLKHGELVETENWLPEGPITIGVTSGASTPDKVVEDALIKV
FDIKREEALQVA*
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