Tc02v2_t009040.1

Overview
NameTc02v2_t009040.1
Unique NameTc02v2_t009040.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2487
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productalpha-L-fucosidase 2, transcript variant X1
NoteAlpha-L-fucosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608032
GenbankXM_018115297.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g009040Tc02v2_g009040Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p009040.1Tc02v2_p009040.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto96878auto96878Theobroma cacaoexon
exon-auto96879auto96879Theobroma cacaoexon
exon-auto96880auto96880Theobroma cacaoexon
exon-auto96881auto96881Theobroma cacaoexon
exon-auto96882auto96882Theobroma cacaoexon
exon-auto96883auto96883Theobroma cacaoexon
exon-auto96884auto96884Theobroma cacaoexon
exon-auto96885auto96885Theobroma cacaoexon
exon-auto96886auto96886Theobroma cacaoexon
exon-auto96887auto96887Theobroma cacaoexon
exon-auto96888auto96888Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto96889auto96889Theobroma cacaoCDS
CDS-auto96890auto96890Theobroma cacaoCDS
CDS-auto96891auto96891Theobroma cacaoCDS
CDS-auto96892auto96892Theobroma cacaoCDS
CDS-auto96893auto96893Theobroma cacaoCDS
CDS-auto96894auto96894Theobroma cacaoCDS
CDS-auto96895auto96895Theobroma cacaoCDS
CDS-auto96896auto96896Theobroma cacaoCDS
CDS-auto96897auto96897Theobroma cacaoCDS
CDS-auto96898auto96898Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t009040.1 ID=Tc02v2_t009040.1|Name=Tc02v2_t009040.1|organism=Theobroma cacao|type=mRNA|length=2487bp
ATGGGAGATGAAGAGTGGGTTCTGGTGCGGCGACCCACTGTGTCGGACCT
CTTGAACCCAAGCTTGATGGTCCCTTCCCACTCCCAGAGTTCAACTTCAA
GGCCACTTAAAGTCACTTTCAACGAACCCGCCAAGTACTGGACCGACGCC
CTGCCCATCGGCAATGGTCGTCTCGGTGCCATGGTTTGGGGTGGCGTCGC
TTCTGAACTTCTCCAGCTCAACGAGGACACCCTTTGGACTGGGGTTCCTG
GAACCTATACAAACCCTAATGCTCCAGATGCACTATCAGAGGTTAGAAAT
CTTGTTGACAGTGGTCAATATGCTAAAGCTACTGCAGCAGCAGCCAAGTT
GGTTGGAAATCCTGCAGATGTTTACCAACTACTTGGTGATATCAAGCTGG
AATTTGATGATTCTCATCTTAATTATGCTAAAGAAACTTATCAGAGAGAG
CTGGACTTGGATACTGCAACTGCACGAATAAAATATATTGTAGGCGACAT
AGAATTTTCCAGGGAGCATTTTGCCTCTAATCCCAACCAAGTAATGGTAA
CAAAGATTTCTGGAAGCAAACCTGGGTCTCTATCTTTTACTGTATCTCTG
GACAGTAAGTTAGATCACCATTGTTGGATGAATGACCAAAGTCAGATTAT
AATGGAAGGACATTGCCCTGAAAAACGAATCCCACCACAAGTGTCTGCAA
ATGACAATCCAAAGGGTATTCAGTTTTCTGCTGTTCTTGATTTACAGATT
AGTGAGGAGAATGGCATGATACATAATCTAAATGACAACAAGTTGAGGGT
TGAAGGTTCAGATTGGGCCATTTTGCTTCTTGTGGCATCATCGTCATTTG
ATGGGCCATTCACTAAGCCTTCAGATTCTAAGAAGGATCCTACTTCAGAT
TCTCTCAGTGTCTTGAAGTCAATGAGAAATCTGTCATATGCTGCTCTTTA
CGCTCATCATATAGATGACTATCAGAATCTTTTTCACCGTGTCTCACTGC
AGCTTTCAAAAAGCTCTATATGTAATTTATGTTTCAAGGAAAGTCAAGAT
GATAGAGTTTCAACAGCAGAGAGAATTAAGTCTTTTCAAATGGATGAAGA
TCCATCTTTAGTGGAGCTTCTGTTCCAGTTTGGTCGATATTTGCTTATTT
CTTCTTCACGGCCTGGAACTCAGGTGGCAAACTTGCAAGGAATATGGAAC
AAAGATCTTGAGCCAAAATGGGATGCTGCTCCTCATTTGAACATCAATCT
TGAAATGAATTACTGGCCTTCTTTGCCTTGCAACCTTAGTGAATGTCAGG
AGCCTTTATTTGATTTTCTCAGTTCCCTATCAGTCAATGGACGCAAAACT
GCAAAAGTCAACTACAAAGCAAATGGTTGGGTTGTACATCATAAATCTGA
CATATGGGCAAAATCATCAGCAGATGCTGGTGATGTTGACTGGGCATTAT
GGCCCATGGGTGGAGCCTGGCTTTGTGTCCATCTCTGGGAGCACTATGCA
TATACCATGGACAATGATTTTCTTAAAGACAAGGCATATCCTTTGTTGGA
AGGATGTGGGTTATTTCTGTTAGATTGGTTGATTGAAGGACAAGAAGGTT
ATCTTGAAACTAACCCATCAACCTCTCCTGAACATGACTTTATCGCTCCA
GATGGTAACCGTGCTAGTGTGAGCTATTCATCAACCATGGACATGGCAAT
CATAAAAGAAGTCTTTTATGTGATCCTTTCAGCTGCTGAGGTTTTAGATA
AAAATGAGGATGATCTAGTAAAAAGAGTGCGTAAGGCTCAATCGAGGCTT
TATCCAACCAAAATTGCTAAAGATGGTTGCATTATGGAATGGGCACAAGA
TTTTCAGGACCCAGATGTGCATCACCGACATCTTTCACACTTGTTTGGCC
TGTTTCCTGGACATACAATAACGATAGAAAGCACACCAGACCTTTGCAAA
GCCGCAGAGCATACACTTCATAAGCGAGGAGAGGAGGGACCAGGATGGTC
AACCACATGGAAAGCTGCTTTGTGGGCACGCCTTCGTAACAGTGAGCATT
CTTATCAGATGGTCAAACATTTAATATACTTTGTGGATCCAGAACATGAG
AAAGCTTTTGAAGGTGGTCTGTACAGTAATTTGTTTGCAGCACACCCTCC
TTTTCAGATTGATGCTAACTTTGGTTTTACAGCAGCAGTTGCAGAAATGC
TTGTTCAAAGTACCATGGAAGACCTTTACCTGCTTCCTGCTCTTTGCCGG
GATAAATGGGCAAATGGATGCGTGAAAGGATTGATGGCACGTGGAGGAGT
GACAGTCAACATATGCTGGAAAGAAGGAAATCTTCACGAAGTCGGTCTTT
GGTTGAAAAACCAGAATTGTCTGAAAAGATTAAGATTACATTACAGAGAA
ACTATGGTATCTGTAAATCTATCCTCTGATTTCCTTTACACATACAATGA
ACAGTTAGAATGTGTGAATACCTACTCCCTCCAATAA
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protein sequence of Tc02v2_p009040.1

>Tc02v2_p009040.1 ID=Tc02v2_p009040.1|Name=Tc02v2_p009040.1|organism=Theobroma cacao|type=polypeptide|length=829bp
MGDEEWVLVRRPTVSDLLNPSLMVPSHSQSSTSRPLKVTFNEPAKYWTDA
LPIGNGRLGAMVWGGVASELLQLNEDTLWTGVPGTYTNPNAPDALSEVRN
LVDSGQYAKATAAAAKLVGNPADVYQLLGDIKLEFDDSHLNYAKETYQRE
LDLDTATARIKYIVGDIEFSREHFASNPNQVMVTKISGSKPGSLSFTVSL
DSKLDHHCWMNDQSQIIMEGHCPEKRIPPQVSANDNPKGIQFSAVLDLQI
SEENGMIHNLNDNKLRVEGSDWAILLLVASSSFDGPFTKPSDSKKDPTSD
SLSVLKSMRNLSYAALYAHHIDDYQNLFHRVSLQLSKSSICNLCFKESQD
DRVSTAERIKSFQMDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWN
KDLEPKWDAAPHLNINLEMNYWPSLPCNLSECQEPLFDFLSSLSVNGRKT
AKVNYKANGWVVHHKSDIWAKSSADAGDVDWALWPMGGAWLCVHLWEHYA
YTMDNDFLKDKAYPLLEGCGLFLLDWLIEGQEGYLETNPSTSPEHDFIAP
DGNRASVSYSSTMDMAIIKEVFYVILSAAEVLDKNEDDLVKRVRKAQSRL
YPTKIAKDGCIMEWAQDFQDPDVHHRHLSHLFGLFPGHTITIESTPDLCK
AAEHTLHKRGEEGPGWSTTWKAALWARLRNSEHSYQMVKHLIYFVDPEHE
KAFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTMEDLYLLPALCR
DKWANGCVKGLMARGGVTVNICWKEGNLHEVGLWLKNQNCLKRLRLHYRE
TMVSVNLSSDFLYTYNEQLECVNTYSLQ*
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