Tc02v2_t009030.1

Overview
NameTc02v2_t009030.1
Unique NameTc02v2_t009030.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2532
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
Productalpha-L-fucosidase 2
NoteAlpha-L-fucosidase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608031
GenbankXM_007042499.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g009030Tc02v2_g009030Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p009030.1Tc02v2_p009030.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto96855auto96855Theobroma cacaoexon
exon-auto96856auto96856Theobroma cacaoexon
exon-auto96857auto96857Theobroma cacaoexon
exon-auto96858auto96858Theobroma cacaoexon
exon-auto96859auto96859Theobroma cacaoexon
exon-auto96860auto96860Theobroma cacaoexon
exon-auto96861auto96861Theobroma cacaoexon
exon-auto96862auto96862Theobroma cacaoexon
exon-auto96863auto96863Theobroma cacaoexon
exon-auto96864auto96864Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto96865auto96865Theobroma cacaoCDS
CDS-auto96866auto96866Theobroma cacaoCDS
CDS-auto96867auto96867Theobroma cacaoCDS
CDS-auto96868auto96868Theobroma cacaoCDS
CDS-auto96869auto96869Theobroma cacaoCDS
CDS-auto96870auto96870Theobroma cacaoCDS
CDS-auto96871auto96871Theobroma cacaoCDS
CDS-auto96872auto96872Theobroma cacaoCDS
CDS-auto96873auto96873Theobroma cacaoCDS
CDS-auto96874auto96874Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t009030.1 ID=Tc02v2_t009030.1|Name=Tc02v2_t009030.1|organism=Theobroma cacao|type=mRNA|length=2532bp
ATGGACGATGGGGAGTGGGTTCTGGTGCGGAAACCCGCAGAGAAGGACAT
TTGGAACCCCACCTCCATGGCCCTTGCCGACACTTCCAAGCCGTTGAAAG
TTACGTTCAGTGGACCTGCCAAGCACTGGACTGACGCAATTCCCATCGGA
AATGGTCGCCTTGGCGCCATGGTGTGGGGCGGCATTGCATCGGAAACTCT
CCAGCTCAATGAGGACACTTTGTGGACTGGGATTCCAGGGAATTACACGA
ATCCTGATGCTCCAGCCGCCTTAGCGGAGGTTAGAAAACTTGTTGACAGT
GGTGAGTATGCTGAGGCTACAAAAGCAGCGGTCAAGTTGTCAGACCATCC
CTCTGATGTTTACCAACTTCTGGGTGATATCAAACTAGAGTTTGATGATT
CACATATTAAGTATACAGAAGGTACATATCGCAGAGAGCTTGACTTGGAA
TCTGCAACAGCAGCGGTGAAATATTCTGTTGGTGATGTTGAATTTACTAG
GGAACATTTTGTTTCAAATCCTGATCAGGTTATAGTAACAAAGATTTCTG
GAAGCAAACCTAAGTCTCTGTCATTTACAGTTTCTCTAGACAGCAAGTTA
CATCATGATTCTCAAGCAAATGGGAAAAATCAGATTATAATGCAAGGAAG
TTGTCCTGGTAAAAGAATCGCACCAAAAGCTAGTGCGAATGAGAATCCGA
AGGGAATTCAGTTTGCTGCATGTCTTGAATTACAAATTAGTGAAGGAGGT
GTTGTAAGCATTTTAGATGACAAGAAGTTGAAGGTTGAAGATTCAGATTG
GGCCGTTCTGCTTCTGGTTGCTTCTTCTTCGTTTGATGGTCCATTCACTA
TGCCTTCAGAATCTAGGAAAGATCCCACTTCAGAGTCTATCAATGCGTTG
AAGTCTATAAAAAACTTGTCATATTCTGATCTTTATGCCCACCACTTGGA
TGATTATCAGAATCTTTTTCACCGTGTATCTCTGCAGCTTTCAAAAAGTT
CAAAGAGCAATTTAAAAGATGGCTCTCTGGCTATGAAGAAGGTTAAATCT
TCTACAACTAATTTATATTTCAGTAAAAGTGAAGATGATGCAGTTTCAAC
TGCAGAGAGGGTGAAATCTTTTCAAACAGATGAAGATCCTTCCTTTGTGG
AGCTTTTGTTTCAATATGGTCGGTATTTGCTTATTTCTTCTTCACGGCCA
GGAACTCAGGTGTCAAATTTGCAGGGTATTTGGAGCAAGGATATTGAGCC
AGCATGGGATGGCGCTCCTCATCTGAATATTAATCTTCAAATGAACTATT
GGCCATCCCTTTCTTGCAACCTGAAAGAGTGCCAGGAACCTTTGTTCGAT
TATATTTCCAGTCTGTCAATCAATGGGAGTAAAACTGCAAAAGTGAATTA
TGAAGCAGGTGGTTGGGTTGCACATCAAGTGTCTGACATATGGGCAAAAA
CATCGCCAGATCGAGGTGAGGCTGTATGGGCTTTATGGCCAATGGGGGGA
GCTTGGCTCTGCACCCATCTTTGGGAGCATTTCGCCTATACAATGGATAA
AGATTTTCTAAAAAATAAGGCATATCCTTTGTTAGAAGGCTGTACTTTCT
TTCTGTTGGACTGGTTGATTGAGGGCCCTGGAGTATATCTGGAAACCAAT
CCATCAACTTCTCCTGAGCATATGTTTGTTGCTCCTAATGGTGAGCAAGC
AAGTGTAAGCTACTCATCAACCATGGACATTGCAATCATAAGAGAAGTGT
TCTCTGAAATTGTTTCTGCTGCTGAGATTTTGGGAAGAAAGGATGATGCT
CTCATTGGAAAAGTCCGTGAAGCTCAGCCAAAGTTGTTACCCACAAAAAT
TGCTAGAGATGGTTCCATTATGGAATGGGCACAAGATTTTCAGGACCCAG
ATGTGCATCATCGACATCTATCACACCTTTTTGGCCTGTTTCCCGGGCAC
ACAATTACCGTTGAAAAGACTCCAGACCTCTGTAAAGCTGCTGATAATAC
CCTCTATAAAAGAGGGGAGGATGGTCCCGGATGGTCAACTACATGGAAAA
TTGCTTTGTGGGCACGTCTTCACAACAGTGAGCATGCTTATCGCATGGTC
AAGCATTTAATTAGTTTGGTGGATCCAACTCATGAAGGTGACTTTGAGGG
AGGACTCTACAGTAACTTGTTCACTGCACATCCTCCTTTTCAAATTGATG
CCAATTTTGGTTTTTCAGCAGCAATTGCAGAAATGCTCGTTCAGAGCACC
ATGAAGGATCTATACTTGCTCCCTGCTCTTCCCCGGGATAAATGGGCAAA
TGGTTGCGTGAAAGGATTGAAAGCACGCGGTGGGGTGACAGTCAACATTT
GCTGGCAAGAAGGAGATCTAGAGGAAGTGGGGCTTTGGTCCAAGGAGCAA
AATTCTGTCGAAAGATTACATTATAGAGGAACAATAATAACGGCAGAGAT
ATCAAGTGGGAAAGTTTACACCTTCAATAGACATCTGAAATGCGTGAGGA
CATACTCTTTGTCGGAAGCGGCTTTTTCTTGA
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protein sequence of Tc02v2_p009030.1

>Tc02v2_p009030.1 ID=Tc02v2_p009030.1|Name=Tc02v2_p009030.1|organism=Theobroma cacao|type=polypeptide|length=844bp
MDDGEWVLVRKPAEKDIWNPTSMALADTSKPLKVTFSGPAKHWTDAIPIG
NGRLGAMVWGGIASETLQLNEDTLWTGIPGNYTNPDAPAALAEVRKLVDS
GEYAEATKAAVKLSDHPSDVYQLLGDIKLEFDDSHIKYTEGTYRRELDLE
SATAAVKYSVGDVEFTREHFVSNPDQVIVTKISGSKPKSLSFTVSLDSKL
HHDSQANGKNQIIMQGSCPGKRIAPKASANENPKGIQFAACLELQISEGG
VVSILDDKKLKVEDSDWAVLLLVASSSFDGPFTMPSESRKDPTSESINAL
KSIKNLSYSDLYAHHLDDYQNLFHRVSLQLSKSSKSNLKDGSLAMKKVKS
STTNLYFSKSEDDAVSTAERVKSFQTDEDPSFVELLFQYGRYLLISSSRP
GTQVSNLQGIWSKDIEPAWDGAPHLNINLQMNYWPSLSCNLKECQEPLFD
YISSLSINGSKTAKVNYEAGGWVAHQVSDIWAKTSPDRGEAVWALWPMGG
AWLCTHLWEHFAYTMDKDFLKNKAYPLLEGCTFFLLDWLIEGPGVYLETN
PSTSPEHMFVAPNGEQASVSYSSTMDIAIIREVFSEIVSAAEILGRKDDA
LIGKVREAQPKLLPTKIARDGSIMEWAQDFQDPDVHHRHLSHLFGLFPGH
TITVEKTPDLCKAADNTLYKRGEDGPGWSTTWKIALWARLHNSEHAYRMV
KHLISLVDPTHEGDFEGGLYSNLFTAHPPFQIDANFGFSAAIAEMLVQST
MKDLYLLPALPRDKWANGCVKGLKARGGVTVNICWQEGDLEEVGLWSKEQ
NSVERLHYRGTIITAEISSGKVYTFNRHLKCVRTYSLSEAAFS*
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