Tc02v2_t008980.3

Overview
NameTc02v2_t008980.3
Unique NameTc02v2_t008980.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3438
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ProductDNA repair protein REV1, transcript variant X2
NoteDNA repair protein REV1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18608025
GenbankXM_018116311.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g008980Tc02v2_g008980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p008980.3Tc02v2_p008980.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto96668auto96668Theobroma cacaoexon
exon-auto96669auto96669Theobroma cacaoexon
exon-auto96670auto96670Theobroma cacaoexon
exon-auto96671auto96671Theobroma cacaoexon
exon-auto96672auto96672Theobroma cacaoexon
exon-auto96673auto96673Theobroma cacaoexon
exon-auto96674auto96674Theobroma cacaoexon
exon-auto96675auto96675Theobroma cacaoexon
exon-auto96676auto96676Theobroma cacaoexon
exon-auto96677auto96677Theobroma cacaoexon
exon-auto96678auto96678Theobroma cacaoexon
exon-auto96679auto96679Theobroma cacaoexon
exon-auto96680auto96680Theobroma cacaoexon
exon-auto96681auto96681Theobroma cacaoexon
exon-auto96682auto96682Theobroma cacaoexon
exon-auto96683auto96683Theobroma cacaoexon
exon-auto96684auto96684Theobroma cacaoexon
exon-auto96685auto96685Theobroma cacaoexon
exon-auto96686auto96686Theobroma cacaoexon
exon-auto96687auto96687Theobroma cacaoexon
exon-auto96688auto96688Theobroma cacaoexon
exon-auto96689auto96689Theobroma cacaoexon
exon-auto96690auto96690Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto96691auto96691Theobroma cacaoCDS
CDS-auto96692auto96692Theobroma cacaoCDS
CDS-auto96693auto96693Theobroma cacaoCDS
CDS-auto96694auto96694Theobroma cacaoCDS
CDS-auto96695auto96695Theobroma cacaoCDS
CDS-auto96696auto96696Theobroma cacaoCDS
CDS-auto96697auto96697Theobroma cacaoCDS
CDS-auto96698auto96698Theobroma cacaoCDS
CDS-auto96699auto96699Theobroma cacaoCDS
CDS-auto96700auto96700Theobroma cacaoCDS
CDS-auto96701auto96701Theobroma cacaoCDS
CDS-auto96702auto96702Theobroma cacaoCDS
CDS-auto96703auto96703Theobroma cacaoCDS
CDS-auto96704auto96704Theobroma cacaoCDS
CDS-auto96705auto96705Theobroma cacaoCDS
CDS-auto96706auto96706Theobroma cacaoCDS
CDS-auto96707auto96707Theobroma cacaoCDS
CDS-auto96708auto96708Theobroma cacaoCDS
CDS-auto96709auto96709Theobroma cacaoCDS
CDS-auto96710auto96710Theobroma cacaoCDS
CDS-auto96711auto96711Theobroma cacaoCDS
CDS-auto96712auto96712Theobroma cacaoCDS
CDS-auto96713auto96713Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t008980.3 ID=Tc02v2_t008980.3|Name=Tc02v2_t008980.3|organism=Theobroma cacao|type=mRNA|length=3438bp
ATGAGTCTGGATTCTTCTCGCTCTGCGAATTCAGGCCCCCAGAATTCGAA
AAGAAGCTTCAATTCAAATTCTTCAAACAATAAGGATAACAGCAGTAATA
GCAAGAAGAGAAAAAGTAACCAGAAAACCCTAGGCATGGCTTGGGGCGCC
AATTCTCTCTCTACCTCTCGCTCCTCTTTCCGCTCTTCTCCTTTCTCTGA
TTTTGGAAGTTATATGGTAGAAAAGAATAGAAAGCTTCAAAATCAGTTTG
ATGCCGAGGCTTCAAATTCTTCTCTTAGCGATACTTCTACGAAGCCTATA
TTTCGCGGGGTTTCTATCTTCGTTGATGGTTTCACGGTTCCGTCTAGTCA
GGAACTGCGGCGATACATGTTGAATTATGGTGGACGATTCGAGAATTATT
TTTCTAGGCATCGAGTCACGCATATTATCTGCAGCAATCTCCCTGATAGT
AAAATCAAGAATATCAGGTCCTTCAGCGGTGGACTGCCAGTAGTGAAACC
TACGTGGGTTCTAGATTCTGTTGCTGTTAACAGACTTTTGAGTTGGGTTC
CCTACCAGCTTGACCAGCTTGCTAGCAATCAACCAACATTGTCAACCTTC
TTCACTTCAAAAATCAGCCCTGCATCTGAGGGCGTTTTTGCAGATGCAAT
TTGTGAAGTAAAACATGGAACTGAGGATTTATGTTTAAAGGATGCATCAA
AGGACGCAAAATTCTCTGAAGCAGGTGAGCCCTCTGAATGGAGGAAGAAA
ATTACTGAAGAACATGATGAACTTATGCATGGAAATACTAATTCAAAAGT
AATTGAGGAGCCAAGTAGTAGCTATAGTGAAGCATCTCAGGAAGTAAAAG
TGGTAGAACGAAGTAATCTGGAACAAGATGATGAAAGCAGGGAAAACAAT
AGACCTCAGTACTGTCCTGAACAACCCTCTGCTTCTGTTAGTAGCCACTG
CTTTGACAATCACAGTGTAAAAGGATCGCCCCATTCAACAGCCCTTGGAC
CTTTGAAGCAGTGTCATTCAACTCTTGGAGATCCCAATTTTGTGGAGAAC
TACTTCAAGAATTCAAGGCTGCATTTCATAGGAACCTGGAGAAATAGATA
TCGTAAGCGTTTTCCCAGCTTGCCAAATGGGTTCAAGTGCATGAATTCTC
ATTCGGATGTTTCGGCTGATACTCAGAAGACTGCCATTATACATATTGAT
ATGGACTGTTTTTTCGTCTCAGTGGTCATCAGGAGCCATCCTGAATTACA
TGACAAGCCTGTAGCTGTATGCCATTCGGACAATCCAAAAGGAACTGCTG
AAATCTCTTCTGCCAATTATCCTGCTCGAGATTATGGAATTAGGGCAGGA
ATGTTTGTTAGAGATGCCAAGGCACTTTGCACCCACCTTGTTATTCTCCC
ATACAACTTTGAAGCATATGAGGAGGTTGCTGATCAGTTTTATAACATCT
TGCATAAGTACTGCAACAGAGTTCAGGCTGTCAGCTGTGATGAAGCATTT
TTAGATGTCACAGACTTAGAAGGGGAAGATCCTAAGCTTTTAGCTTCAGC
AATACGGAAAGAGATATTTGAAGCTACTGGATGCACTGCAAGTGCTGGGA
TAGCTGTGAATATGCTTATGGCCCGTCTAGCCACCAGAACTGCTAAACCA
AATGGTCAATGCTACATTTCTCCTGAGAGGGTTGATGAGTATTTAGACCA
ACTTCCATTAAAAGCACTTCCAGGAATAGGGCATGTGCTAGAGGAAAAGT
TGAAAAATAGAAATGTTAGAACTTGTGGACAGTTGCGTATGATTTCTAAG
GGCTCCCTTCAAAAGGATTTTGGGTTTAAAACTGGTGAGATGCTCTGGAA
TTACAGTAGAGGAGTGGATAATCGACTTGTTGGAACAATTCAGGAGAGCA
AGTCTGTGGGGGCTGAAGTGAACTGGGGTGTAAGATTCAGGGATTTGCAA
GATACCCAGCACTTTCTCTTGGACCTTTGCAAAGAGGTTTCATTGCGCTT
GCAGGGGTGTGGGGTGCAAGGGCGAACTTTCACACTTAAGATAAAAAAGA
GAAGGAAAGATGCTGGGGAGCCTGCAAAGTATATGGGCTGTGGAGACTGT
GAAAACCTGAGCCATAGCACAACGGTTCCACTTGCCACTGATGATGTCGA
AGTGCTTCAGAGAATTACAAAGCAGCTCTTTGGATTTTTCCACGTAGATG
TCAAGGATATCCGGGGTGTTGGTTTGCAAGTTTCGAGGCTTGAAAGCGTA
GATACTTCTAAGCAAGTGCTTGAGAGGAATTCGTTGAAATCATGGCTTAT
GTCTGCCTCAGCAAGCTCAGAAGAACGATGTGATGTCAGTAGTATAGCCA
AAGACAGGGTTGGTACAGATACTGAAGGAAAGAGCATGGGTGGAAATTCA
GGTGTGTTATGCACTGATCCAGTGGGGAATTCTGTTCTTAGGACAAATAA
TACATCCAATGGTGATGGTTGTTCAAACCAGATCTTAAGCATCCCACAGT
TATGCCACCTCGATATGGGAGTAGTGGAGAGTCTTCCATCAGAGCTCCAG
TCAGAATTAAATGAAATGTATGGTGGGAAGCTAGTTGATTTGATTGCTAA
AAGTAAAGGACAAGGTGAGAACAGCACCGGTTCTTTATGCTTCCATCCTC
CTGAACTATCCAAAGAGGAAGCAGAAAGATCTCACAATTCTGATCCTATC
TCATTGAGCAGAACAGCTGTGGAAATGATGGGCAAACAGCATATATTGGA
GGAACTGCAGACAGTGCCTGACTCTGGGACTGGATCCAACAGTAATGCTA
TTTCCATTCAAGCACTTGATAATAATGATTTAATGCCTTCATCTCTAAGC
CAAGTAGACACATCAGTGTTACAGCAGTTGCCTGAGGAATTGAGAGCTGA
CTTATTTGAGTCGCTTCCTGCACACAGGAGGCAAGAAATCTCTACCCTGG
GCCCTAATAGGGATAATTTGCATCATCCATTATGCATCAATCAACCTGAA
TCAACTGATTCTGGGCTGACCAACAATCTCTGGATTGGAAATCCTCCACT
GTGGGTTGATAAGTTTAAAGTCAGCAATTTGTTGATGTTGAGATTTTTTG
CTGACATGTACTACAAATCAAAGTCAGCTGAGAATTTATCTTCAATTCTG
CAATGCACTATTGCTGAATCTTTACATCCTTTAGATGCAAAATGTGACGC
TTGGAATGAAGCTGTTCACAGCTTCAATGAGCTTCTCATGGAGTATATTA
AACTGAAGATAGTAGTAGATATTGAGGAGATCTATGTTTGTTTTCGTCTT
CTAAGAAGGCTAAGTACCAAGTCAGAATTTTTCTTGGAAGTGTACAATTT
GGTCTTCCCCCACCTTCAGGATTTATGCTTTGGAAAATTAAACACATTTT
TAGCACTGGAGTTTTCAATTTTAACTTCTTTACATTAA
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protein sequence of Tc02v2_p008980.3

>Tc02v2_p008980.3 ID=Tc02v2_p008980.3|Name=Tc02v2_p008980.3|organism=Theobroma cacao|type=polypeptide|length=1146bp
MSLDSSRSANSGPQNSKRSFNSNSSNNKDNSSNSKKRKSNQKTLGMAWGA
NSLSTSRSSFRSSPFSDFGSYMVEKNRKLQNQFDAEASNSSLSDTSTKPI
FRGVSIFVDGFTVPSSQELRRYMLNYGGRFENYFSRHRVTHIICSNLPDS
KIKNIRSFSGGLPVVKPTWVLDSVAVNRLLSWVPYQLDQLASNQPTLSTF
FTSKISPASEGVFADAICEVKHGTEDLCLKDASKDAKFSEAGEPSEWRKK
ITEEHDELMHGNTNSKVIEEPSSSYSEASQEVKVVERSNLEQDDESRENN
RPQYCPEQPSASVSSHCFDNHSVKGSPHSTALGPLKQCHSTLGDPNFVEN
YFKNSRLHFIGTWRNRYRKRFPSLPNGFKCMNSHSDVSADTQKTAIIHID
MDCFFVSVVIRSHPELHDKPVAVCHSDNPKGTAEISSANYPARDYGIRAG
MFVRDAKALCTHLVILPYNFEAYEEVADQFYNILHKYCNRVQAVSCDEAF
LDVTDLEGEDPKLLASAIRKEIFEATGCTASAGIAVNMLMARLATRTAKP
NGQCYISPERVDEYLDQLPLKALPGIGHVLEEKLKNRNVRTCGQLRMISK
GSLQKDFGFKTGEMLWNYSRGVDNRLVGTIQESKSVGAEVNWGVRFRDLQ
DTQHFLLDLCKEVSLRLQGCGVQGRTFTLKIKKRRKDAGEPAKYMGCGDC
ENLSHSTTVPLATDDVEVLQRITKQLFGFFHVDVKDIRGVGLQVSRLESV
DTSKQVLERNSLKSWLMSASASSEERCDVSSIAKDRVGTDTEGKSMGGNS
GVLCTDPVGNSVLRTNNTSNGDGCSNQILSIPQLCHLDMGVVESLPSELQ
SELNEMYGGKLVDLIAKSKGQGENSTGSLCFHPPELSKEEAERSHNSDPI
SLSRTAVEMMGKQHILEELQTVPDSGTGSNSNAISIQALDNNDLMPSSLS
QVDTSVLQQLPEELRADLFESLPAHRRQEISTLGPNRDNLHHPLCINQPE
STDSGLTNNLWIGNPPLWVDKFKVSNLLMLRFFADMYYKSKSAENLSSIL
QCTIAESLHPLDAKCDAWNEAVHSFNELLMEYIKLKIVVDIEEIYVCFRL
LRRLSTKSEFFLEVYNLVFPHLQDLCFGKLNTFLALEFSILTSLH*
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