Tc02v2_t008720.1

Overview
NameTc02v2_t008720.1
Unique NameTc02v2_t008720.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1803
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductD-3-phosphoglycerate dehydrogenase 3, chloroplastic
NoteD-3-phosphoglycerate dehydrogenase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607999
GenbankXM_007042456.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g008720Tc02v2_g008720Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p008720.1Tc02v2_p008720.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto96275auto96275Theobroma cacaoexon
exon-auto96276auto96276Theobroma cacaoexon
exon-auto96277auto96277Theobroma cacaoexon
exon-auto96278auto96278Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto96279auto96279Theobroma cacaoCDS
CDS-auto96280auto96280Theobroma cacaoCDS
CDS-auto96281auto96281Theobroma cacaoCDS
CDS-auto96282auto96282Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t008720.1 ID=Tc02v2_t008720.1|Name=Tc02v2_t008720.1|organism=Theobroma cacao|type=mRNA|length=1803bp
ATGGCTTCTCTCAAAACCCCAACTCTCAAAAGCCCTCCCCTTTCCCTTTC
CTCCGAATCCCGCCTCCCTTCCGCATTTTCCGCCACCTTCCCTAACAACA
TCCGCTTTGCACGCTCCCTCCCGCAACGCCGTTTCTTAATCATAACCGCT
TCTGCCGCCTCTTTCTCCAACAAACCCACCGTGCTCGTCGCCGAAAAACT
CGGCGAAGCTGGTTTAACGCTTCTCAAGCAGTTCACCAACGTGGACTGTT
CTTACAACCTCTCTCCCGAAGAGCTTTGCACCAAGATCTCGCTTTGTGAC
GCCTTGATTGTGCGCAGCGGAACCAAAGTCAACCGCGAGGTCTTTGAATC
CTCCGGCGGGAGATTGAAAGTTGTTGGGAGAGCTGGTGTTGGGATCGATA
ATGTGGATCTGGCCGCTGCTACCGAGCATGGATGTTTGGTCGTCAATGCG
CCTACCGCTAATACCGTCGCCGCGGCTGAGCACGGGATCGCGCTCTTGGC
TGCCATGGCTAGGAACGTGGCTCAGGCTGACGCTTCAGTTAAGGCTGGGA
AGTGGCAGCGGAACAAATATGTGGGTGTATCACTTGTTGGGAAAACACTT
GCTGTATTGGGTTTTGGAAAGGTTGGATCAGAAGTAGCTCGGAGAGCTAA
GGGACTTGGCATGCATGTTATTTCACATGATCCTTATGCCCCAGCTGATC
GTGCACGTGCGATAGGTGTAGAGCTAGTGAGCTTTGAGGTAGCCATAGCG
ACTGCAGATTTTATTTCTTTGCACATGCCTCTCACTGCTGCTACTTCTAA
GATGCTCAATGATGAGACTTTTGCTAAGATGAAGAAAGGTGTTCGAATTG
TCAATGTTGCTCGTGGGGGAGTGATTGATGAAGAGGCTCTTGTTAGGGCA
TTGGATGCTGGGATTGTAGCTCAGGCTGCTCTTGATGTTTTCACTGAGGA
GCCGCCAAAACAGGACAGCAAGTTGGTGCAGCATGAGAGGGTTACTGTGA
CTCCACATCTTGGTGCTAGTACAATGGAGGCTCAGGAAGGAGTGGCTATT
GAAATAGCTGAAGCTGTTGTTGGAGCCTTGAAAGGGGAACTTGCTGCAAC
TGCAGTCAATGCACCAATGGTTCCTGCTGAGGTTCTAACGGAGTTGAAAC
CATATGTTGAACTTGCTGAGAAACTTGGGAGGCTGGCTGTCCAATTGGTA
GCAGGTGGAAGTGGTGTTAAAACTGTGAAAGTATCATACGCTTCCTCTAG
AGCCCCTGATGATCTTGACACAAGGTTGCTCCGGGCGATGATCACCAAGG
GTATAATCGAGCCTATTTCCAGCGTTTTTGTGAACCTGGTTAATGCTGAT
TATACAGCAAAACAGAGAGGATTGCGGATTACAGAGGAACGCATCATTTT
GGATGGTTCACCTGAGAGCCCACTGGAGTCCATCCAAGTTCAGATTGCCA
ATGTGGAATCAAAATTTGCCAGCGCCATATCAGAGTCTGGTGAGATTAAG
GTTGAAGGACGGGTGAAGGATGGAATTCCTCATTTGACAAAGGTAGGGTC
ATTTGAAGTGGATGTGAGCTTGGAGGGCAGTATCATACTTTGCAGACAGG
TTGATCAGCCTGGTATGATTGGTAGGGTAGGAAGTATTTTGGGTGAGGAG
AATGTGAATGTGAGCTTCATGAGTGTTGGGAGGATTGCTCCAAGGAAGCA
AGCAGTGATGGCCATAGGAGTGGACGAGCAGCCTAGCAAAGAATCTTTAA
AGAAGATTGGTGAAGTCCCTGCAATTGAAGAGTTTGTTTTCCTCAAGTTG
TAG
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protein sequence of Tc02v2_p008720.1

>Tc02v2_p008720.1 ID=Tc02v2_p008720.1|Name=Tc02v2_p008720.1|organism=Theobroma cacao|type=polypeptide|length=601bp
MASLKTPTLKSPPLSLSSESRLPSAFSATFPNNIRFARSLPQRRFLIITA
SAASFSNKPTVLVAEKLGEAGLTLLKQFTNVDCSYNLSPEELCTKISLCD
ALIVRSGTKVNREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNA
PTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTL
AVLGFGKVGSEVARRAKGLGMHVISHDPYAPADRARAIGVELVSFEVAIA
TADFISLHMPLTAATSKMLNDETFAKMKKGVRIVNVARGGVIDEEALVRA
LDAGIVAQAALDVFTEEPPKQDSKLVQHERVTVTPHLGASTMEAQEGVAI
EIAEAVVGALKGELAATAVNAPMVPAEVLTELKPYVELAEKLGRLAVQLV
AGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGIIEPISSVFVNLVNAD
YTAKQRGLRITEERIILDGSPESPLESIQVQIANVESKFASAISESGEIK
VEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGRVGSILGEE
NVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKKIGEVPAIEEFVFLKL
*
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