Tc02v2_t007260.1

Overview
NameTc02v2_t007260.1
Unique NameTc02v2_t007260.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1782
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productserine hydroxymethyltransferase 6
NoteSerine hydroxymethyltransferase 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607820
GenbankXM_018116024.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g007260Tc02v2_g007260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p007260.1Tc02v2_p007260.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto93653auto93653Theobroma cacaoexon
exon-auto93654auto93654Theobroma cacaoexon
exon-auto93655auto93655Theobroma cacaoexon
exon-auto93656auto93656Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto93657auto93657Theobroma cacaoCDS
CDS-auto93658auto93658Theobroma cacaoCDS
CDS-auto93659auto93659Theobroma cacaoCDS
CDS-auto93660auto93660Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t007260.1 ID=Tc02v2_t007260.1|Name=Tc02v2_t007260.1|organism=Theobroma cacao|type=mRNA|length=1782bp
ATGGATTTGTCATCTCAATCTACTGACACGTCATCAACCCTCTCTTTGGG
GCTAGTATCTCCTTCGCCGCCGTCCCACCGTAGCCAGATCGTCGATGACT
CCATTACTCTCCAGCTGGACACCAGGGACACCACCCACCCAGTCCCACCT
GTCCCTCTCCAACTACTGGAACCGCAAACGGAGAACCATAACTCTCTCCA
AAACGGGAAGCAGAAAGAAAGCGAGAGTTACAACGAAGATGAAGAGAGTA
AGGAAATGGAAGAATTCCATATATTAGGGCATCCTATGTGTCTCAAAAGG
CGGAGAGACAGTTGTTCGTCGTCGTCGTCGTCGACGAAGCGAATGACGGT
GGAGCCGGATCTTGAGACGAGAAAAGCAACCGTGAAATCATGGGGCAGCC
AGCCGCTCCACGTGGCGGATCCTGACGTGTTCGACATAATGGAACAGGAG
AAAAAGCGGCAGTTCCTGGGGATTGAGTTGATTGCCTCTGAAAATTTCGT
TTGCCGGGCCGTTATGGATGCTCTTGGAAGCCATTTAACCAACAAATACT
CCGAAGGTATGCCAGGAGCAAGGTATTATGGCGGGAACCAGTACATTGAT
GAAATAGAAACCCTTTGTTGGAAACGAGCATTGGAAGCTTTTGGGCTTGA
TGCAGAGAACTGGGGAGTCAATGTGCAGCCTTATTCATGTACCTCAGCCA
ATTTTGCGGTGTATACTGGGTTGCTGTTGCCCGGAGATAGGATCATGGGA
TTGGATACGCCTTCTGGAGGGAATACGAGTCACGGATATTATACTCCAAA
TGGGAGGAAGGTGTCTGGTGCATCAATATTTTTTGAGAGTTTGCCATATA
AAGTGAATCCGCAAACTGGGTATATTGATTATGAGAAGTTGGAGGAAAGG
GCACTTGATTTTAGGCCCAAGATATTGATTTGTGGTGGGAGTTCCTATCC
GAGGGAATGGGATTATGCAAGGTTTAGACAAATTGCGGATAAGTGTGGTG
CTGTTTTGCTGTGTGACATGGCTCAGATTAGTGGTCTTATTGCTGCTAAG
GAATCTGCCAACCCCTTTGACTACTGCGACATTGTTACCTCAACCACCCA
TAAAAGCCTCCGAGGTCCCAGAGGAGGTATAATTTTCTATAGGAAGGGTA
CAAAGCCAAGGAAGGGAGGGATGCTTCTAAGCCAAGGAGATGACAATGAT
CAATATGATTTTGAGGAAAAGATAAACTTTGCTGTTTTTCCATCTTTGCA
AGGTGGACCGCATAATAATCATATTGCTGCTCTTGCCATAGCATTGAAGC
AAGTAGCTACACCAGAGTACAAGGCTTATATGCATCAAGTGAAGAAAAAT
GCTCAGGCTTTAGCATCTGCATTGTCAAGAAGAAAATGCAGGCTAGTTAC
TGGAGGCACGGACAACCATTTGTTACTCTGGGATCTAAGACCTTTTGGGT
TGACAGGTAAAATTTATGAAAAGGTTTGTGAGATGTGTCATACTACTCTG
AATAAAATCGCTATTTTTGGTGATAATGGTGCCATTACTCCTGGAGGAGT
AAGGATTGGTACTCCTGCTATGACATCGAGAGGTTGCCTAGAGTCTGATT
TCGAGACAATTGCTGACTTTCTCCTTAGAGCTGCACATATTGCAAGTATG
ATGCAGCGTGATCATGGGAAATTGCAGAAGACCTCCTTGAAGAGTCTCCA
CAATAATAAGGATCTTTTGGAGCTCCGAACACAAGTTGAGACTTTTGCAT
CTCAGTTTGCAATGCCAGGTTATGACATTTGA
back to top

protein sequence of Tc02v2_p007260.1

>Tc02v2_p007260.1 ID=Tc02v2_p007260.1|Name=Tc02v2_p007260.1|organism=Theobroma cacao|type=polypeptide|length=594bp
MDLSSQSTDTSSTLSLGLVSPSPPSHRSQIVDDSITLQLDTRDTTHPVPP
VPLQLLEPQTENHNSLQNGKQKESESYNEDEESKEMEEFHILGHPMCLKR
RRDSCSSSSSSTKRMTVEPDLETRKATVKSWGSQPLHVADPDVFDIMEQE
KKRQFLGIELIASENFVCRAVMDALGSHLTNKYSEGMPGARYYGGNQYID
EIETLCWKRALEAFGLDAENWGVNVQPYSCTSANFAVYTGLLLPGDRIMG
LDTPSGGNTSHGYYTPNGRKVSGASIFFESLPYKVNPQTGYIDYEKLEER
ALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLLCDMAQISGLIAAK
ESANPFDYCDIVTSTTHKSLRGPRGGIIFYRKGTKPRKGGMLLSQGDDND
QYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMHQVKKN
AQALASALSRRKCRLVTGGTDNHLLLWDLRPFGLTGKIYEKVCEMCHTTL
NKIAIFGDNGAITPGGVRIGTPAMTSRGCLESDFETIADFLLRAAHIASM
MQRDHGKLQKTSLKSLHNNKDLLELRTQVETFASQFAMPGYDI*
back to top