Tc02v2_t006400.1

Overview
NameTc02v2_t006400.1
Unique NameTc02v2_t006400.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1950
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ProductSUMO-activating enzyme subunit 2
NoteSUMO-activating enzyme subunit 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607729
GenbankXM_007042035.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g006400Tc02v2_g006400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p006400.1Tc02v2_p006400.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto92113auto92113Theobroma cacaoexon
exon-auto92114auto92114Theobroma cacaoexon
exon-auto92115auto92115Theobroma cacaoexon
exon-auto92116auto92116Theobroma cacaoexon
exon-auto92117auto92117Theobroma cacaoexon
exon-auto92118auto92118Theobroma cacaoexon
exon-auto92119auto92119Theobroma cacaoexon
exon-auto92120auto92120Theobroma cacaoexon
exon-auto92121auto92121Theobroma cacaoexon
exon-auto92122auto92122Theobroma cacaoexon
exon-auto92123auto92123Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto92124auto92124Theobroma cacaoCDS
CDS-auto92125auto92125Theobroma cacaoCDS
CDS-auto92126auto92126Theobroma cacaoCDS
CDS-auto92127auto92127Theobroma cacaoCDS
CDS-auto92128auto92128Theobroma cacaoCDS
CDS-auto92129auto92129Theobroma cacaoCDS
CDS-auto92130auto92130Theobroma cacaoCDS
CDS-auto92131auto92131Theobroma cacaoCDS
CDS-auto92132auto92132Theobroma cacaoCDS
CDS-auto92133auto92133Theobroma cacaoCDS
CDS-auto92134auto92134Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t006400.1 ID=Tc02v2_t006400.1|Name=Tc02v2_t006400.1|organism=Theobroma cacao|type=mRNA|length=1950bp
ATGGCTTCACAAGAACAGTTATCCGCCATAAAGGGGGCGAAAGTGCTTAT
GGTTGGGGCTGGTGGGATTGGTTGTGAGCTTCTCAAGACTCTTGCTCTTT
CTGGGTTTCAAGATATTCATATTATTGACATGGACACTATAGAAGTCAGC
AACCTGAATAGACAATTTTTGTTCCGACAATCCCATGTTGGGCAGTCTAA
GGCCAAGGTCGCTCGAGATGCAGTCTTAAGAGTCAGGCCCAATATAAGCA
TTACACCATACCATGCAAATGTTAAGGAGTCTCGCTTCAATGTGGATTTC
TTTAAAGAGTTTGATGTTGTTCTGAATGGGCTGGATAATTTAGATGCAAG
GCGCCATGTGAACCGTCTTTGCCTGGCAGCTGACGTACCATTGGTTGAAA
GTGGGACCACAGGGTTCTTGGGACAGGTCACTGTACATTTGAAGGGAAAA
ACAGAATGCTATGAATGTCAGCCAAAACCTGCCCCAAAGACTTATCCTGT
ATGTACAATTACAAGCACTCCATCGAAGTTTGTTCATTGTATTGTGTGGG
CAAAGGACCTGCTTTTTGCAAAGTTGTTTGGGGACAAGAATCTAGAAAAT
GATTTGAATGTGCACTCTAATGATGCTGCAAATTCTTCAGAACATTCAGA
TGTATTTGAATATAGAAAAGATGAAGATATCGAAGAATATGGAAGAAGAA
TATATGATCATGTGTTTGGTCATAACATAGAAGTGGCTCTGTCTAATGAA
GAAACGTGGAAAAACCGTAACAAACCACGGCCTATATATAGTAAGGATGT
CCTGCCCGAGAAACTATCTGAACAGAATGGAAACATGGAAAAAGGTTGTG
TAACTGATGACGTCTCTGCCATGGCATCTCTGGGCTTGAAAAATCCTCAG
GATGTATGGAGCCTTGGAGAAAATTCAAGAGTTTTCCTCGAGGCTTTGAG
ATTATTTTTCTTGAAGAGGGAAAAGGAAATAGGGAACCTGACTTTTGATA
AAGATGATCAATTGGCTGTGGAATTTGTTACTGCTGCTGCAAATATTCGT
GCTTCTTCTTTTGGGATTCCTTTACATAGTCTTTTCGAAGCTAAAGGTAT
TGCTGGTAATATCGTGCATGCTGTTGCAACAACAAATGCTATCATAGCTG
GGTTGATCGTGATTGAAGCAATTAAGGTTTTAATAAAGGATAGCAACAAT
TACAGGATGACATATTGTCTAGAACATCCTTCAAGAAAGATGCTTCTTAT
GCCTGTGGAACCCTATGAACCTAACAAGTCTTGCTATGTTTGTTCAGAGA
CACCTCTATCACTTGAGGTTAATACTCATCGTTCTAAGCTGCGGGATTTC
GTTGAAAAGATTGTTAAAGCCAAACTTGGCATGAACTTTCCACTAATTAT
GCAAGGGGCAAGTATTCTTTATGAAGTTGGTGAAGATCTTGAAGAGGATA
TGGTAGCAATTTATGCTGCAAACCTTGAGAAAGCCTTATCCGAGCTGCCT
TCTCCAGTTACTAGTGGGACTGTGCTTACTGTCGAGGATCTTCAGCAGGA
GTTCTCACGCAATATCAATATCAAGCATAGGGAAGAATTTGATGAGGAGA
AGGAACCTGATGGAATGCTTCTCTCTGGATGGGTTGAACCTCCTGTTGAT
AAGGACAAGAATAAGCCTATTGGAAATGGTGAAAGTACATCCAATGCTTT
ACCAGCAGAGGAGAGTCTGGAGGCCAAGAAGGACGTTACAATTCAGGAAA
TTTCAGAGGTGACTGAAATTGCTACTGGGACGAAAAGAAAATTGTCTGAG
GTTTCGAAAGGCACCACTCCAGATCATTCAGGCCTTTCTGATGAAACTCG
AAATCACAATCAACTCGAAAAGCTTGATGTTGATGATGAGGATGATGAAC
TCATGATATCTGATGATTGGGAATCACTCACCAAGAAGAAAAGGTTGTAA
back to top

protein sequence of Tc02v2_p006400.1

>Tc02v2_p006400.1 ID=Tc02v2_p006400.1|Name=Tc02v2_p006400.1|organism=Theobroma cacao|type=polypeptide|length=650bp
MASQEQLSAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVS
NLNRQFLFRQSHVGQSKAKVARDAVLRVRPNISITPYHANVKESRFNVDF
FKEFDVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHLKGK
TECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNLEN
DLNVHSNDAANSSEHSDVFEYRKDEDIEEYGRRIYDHVFGHNIEVALSNE
ETWKNRNKPRPIYSKDVLPEKLSEQNGNMEKGCVTDDVSAMASLGLKNPQ
DVWSLGENSRVFLEALRLFFLKREKEIGNLTFDKDDQLAVEFVTAAANIR
ASSFGIPLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLIKDSNN
YRMTYCLEHPSRKMLLMPVEPYEPNKSCYVCSETPLSLEVNTHRSKLRDF
VEKIVKAKLGMNFPLIMQGASILYEVGEDLEEDMVAIYAANLEKALSELP
SPVTSGTVLTVEDLQQEFSRNINIKHREEFDEEKEPDGMLLSGWVEPPVD
KDKNKPIGNGESTSNALPAEESLEAKKDVTIQEISEVTEIATGTKRKLSE
VSKGTTPDHSGLSDETRNHNQLEKLDVDDEDDELMISDDWESLTKKKRL*
back to top