Tc02v2_t004620.1

Overview
NameTc02v2_t004620.1
Unique NameTc02v2_t004620.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length471
Properties
Property NameValue
NoteSKP1-like protein 1A
Model evidenceSupporting evidence includes similarity to: 21 ESTs, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductSKP1-like protein 1A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607537
GenbankXM_007041751.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g004620Tc02v2_g004620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p004620.1Tc02v2_p004620.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto88752auto88752Theobroma cacaoexon
exon-auto88753auto88753Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto88754auto88754Theobroma cacaoCDS
CDS-auto88755auto88755Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t004620.1 ID=Tc02v2_t004620.1|Name=Tc02v2_t004620.1|organism=Theobroma cacao|type=mRNA|length=471bp
ATGGCGTCGACTTCGAAGAAGATAATGTTAAGGAGCTCCGACGGAGAGGC
GTTCGAGGTGGAGGAAGCGGTGGCGGTTGAGTCGCAGACGATCAAGCACA
TGATCGAAGACGATTGCGCCGACAACGAGATCCCTGTCCCCAACGTCACC
AGCAAGATCTTGGCCAAGGTCCTCGAGTACTGCAAGAAGCACGTCGATGC
AGCCGCCGACAAGGAAAAGATCCCCGAGGATGATCTCAAGGTGTGGGATG
CTGATTTTGTCAAGGTTGACCAAAATACCCTCTTTGACCTGATCTTGGCT
GCGAACTATTTGAACATCAAGAGTTTGTTGGACTTGACTTGCCAAACTGT
TGCTGAAATGATCAAGGGGAAGACACCCGAGGAGATTCGCAAGACCTTCA
ACATTAAGAATGATTTTACCCCAGAGGAAGAAGAGGAGGTTAGGAGGGAG
AACCAGTGGGCATTTGAGTGA
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protein sequence of Tc02v2_p004620.1

>Tc02v2_p004620.1 ID=Tc02v2_p004620.1|Name=Tc02v2_p004620.1|organism=Theobroma cacao|type=polypeptide|length=157bp
MASTSKKIMLRSSDGEAFEVEEAVAVESQTIKHMIEDDCADNEIPVPNVT
SKILAKVLEYCKKHVDAAADKEKIPEDDLKVWDADFVKVDQNTLFDLILA
ANYLNIKSLLDLTCQTVAEMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRE
NQWAFE*
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