Tc02v2_t004210.1

Overview
NameTc02v2_t004210.1
Unique NameTc02v2_t004210.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1026
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productheterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
NoteHeterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607476
GenbankXM_007041658.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g004210Tc02v2_g004210Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p004210.1Tc02v2_p004210.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto87687auto87687Theobroma cacaoexon
exon-auto87688auto87688Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto87689auto87689Theobroma cacaoCDS
CDS-auto87690auto87690Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t004210.1 ID=Tc02v2_t004210.1|Name=Tc02v2_t004210.1|organism=Theobroma cacao|type=mRNA|length=1026bp
ATGTTGGCTTTTTCAACAGTGATAACATCAGGGCCAAATCTATACCTTCC
AAAGAAACCCCGGAATTTTCACTTCCCAATTCGGTGCCTTTCTTCGACAT
CTTTATCAGCTTCGAGCCAACCATCAAAGTTGACCCAATTCGATTTAAAG
ACTTACTGGACTACCCTTATAGCAGAAATCAATCAGAAGCTTGAAGAAGC
AATCCCGGTCAAGTACCCAGAGCAGATCTATGAAGCTATGAGGTACTCTG
TTCTTGCAAAGGGTGCTAAGCGAGCCCCTCCCGTTATGTGTGTCGCCGCT
TATGAACTCTTTGGTGGTAACCGACTCGCTGCTTTTCCTACAGCTTGTGC
TCTTGAAATGGTTCACACTGCTTCACTAATTCATGATGATCTTCCCTGCA
TGGATGATGATCCAGTACGCAGAGGTCAACCGTCTAACCATACAATTTAT
GGTGTCGACATGGCAATCCTGGCTGGTGATGCACTCTTCCCTCTTGGCTT
CCGCCATATTGTCTCTCAAACACCTACTGAACTTGTTCCTGAGGCACGCA
TCTTGCGTGTGATTGCTGAGATTGCCCGCACAGTGGGATCTGCTGGCATG
GCTGCTGGGCAGTTCCTAGACCTCAAGGGTGACGCCAATTCTGTTGATTT
TATTCAAGAGAAAAAATATGGTGAAATGAGTGAGTGCTCTGCAGTGTGTG
GGGGTTTGTTGGCTGGTGCTGAAGATGATGAGATAGAAAGGTTGAGAAGG
TATGGGAGAGCTGTTGGTGTATTGTATGAAGTGGTTAATGATGTTTTGGA
GGCAAAATTGGTGGAAAAGGAGGAAACTGAGAAGAACCAAAAGAAAGGTA
AAAGTTATGTGAGTATGTACGGGGTTAAGAAGGCGATGGAGGTGGCAGAA
GACCTTCAGACCAAGTCTAAGGGCGAATTGGATGGGTTTGACAAGTATGG
TGAGAGTGTAGCAGCACTATATAGCTTCATAGATTATGCTTTTTATAGAG
ACTTCAATGTTGATGACTTGAGCTAA
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protein sequence of Tc02v2_p004210.1

>Tc02v2_p004210.1 ID=Tc02v2_p004210.1|Name=Tc02v2_p004210.1|organism=Theobroma cacao|type=polypeptide|length=342bp
MLAFSTVITSGPNLYLPKKPRNFHFPIRCLSSTSLSASSQPSKLTQFDLK
TYWTTLIAEINQKLEEAIPVKYPEQIYEAMRYSVLAKGAKRAPPVMCVAA
YELFGGNRLAAFPTACALEMVHTASLIHDDLPCMDDDPVRRGQPSNHTIY
GVDMAILAGDALFPLGFRHIVSQTPTELVPEARILRVIAEIARTVGSAGM
AAGQFLDLKGDANSVDFIQEKKYGEMSECSAVCGGLLAGAEDDEIERLRR
YGRAVGVLYEVVNDVLEAKLVEKEETEKNQKKGKSYVSMYGVKKAMEVAE
DLQTKSKGELDGFDKYGESVAALYSFIDYAFYRDFNVDDLS*
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