Tc02v2_t003940.3

Overview
NameTc02v2_t003940.3
Unique NameTc02v2_t003940.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2577
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productalanine--tRNA ligase, chloroplastic/mitochondrial, transcript variant X3
NoteAlanine--tRNA ligase, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607448
GenbankXM_018116218.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003940Tc02v2_g003940Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003940.3Tc02v2_p003940.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto87433auto87433Theobroma cacaoexon
exon-auto87434auto87434Theobroma cacaoexon
exon-auto87435auto87435Theobroma cacaoexon
exon-auto87436auto87436Theobroma cacaoexon
exon-auto87437auto87437Theobroma cacaoexon
exon-auto87438auto87438Theobroma cacaoexon
exon-auto87439auto87439Theobroma cacaoexon
exon-auto87440auto87440Theobroma cacaoexon
exon-auto87441auto87441Theobroma cacaoexon
exon-auto87442auto87442Theobroma cacaoexon
exon-auto87443auto87443Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto87444auto87444Theobroma cacaoCDS
CDS-auto87445auto87445Theobroma cacaoCDS
CDS-auto87446auto87446Theobroma cacaoCDS
CDS-auto87447auto87447Theobroma cacaoCDS
CDS-auto87448auto87448Theobroma cacaoCDS
CDS-auto87449auto87449Theobroma cacaoCDS
CDS-auto87450auto87450Theobroma cacaoCDS
CDS-auto87451auto87451Theobroma cacaoCDS
CDS-auto87452auto87452Theobroma cacaoCDS
CDS-auto87453auto87453Theobroma cacaoCDS
CDS-auto87454auto87454Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003940.3 ID=Tc02v2_t003940.3|Name=Tc02v2_t003940.3|organism=Theobroma cacao|type=mRNA|length=2577bp
ATGGCTAAGATTCTTCATGAATCTATTATTCCCAGACAAGTACCTTGTGC
TACTACTGCACAAAGGTGTATACGTACAAATGATGTGGAGAATGTTGGCA
GAACGGCAAGGCATCATACATTTTTTGAAATGCTAGGCAATTTCTCCTTT
GGAGATTACTTTAAGAAGGAAGCAATCCAATGGTCATGGGAGCTTTCCAC
CGTGGAATTTGGGTTGCCACCTGAGAGATTATGGATAAGTGTGTATGAAG
ATGATGATGAAGCTTTTGAAATATGGCACAAGGAGGTGGGTGTTCCTGTT
GAACGCATAAAAAGAATGGGTGAAGATGACAACTTTTGGATGAGTGGTGC
TACTGGTCCCTGTGGCCCATGCTCTGAGATTTATTATGATTTCCATCCTG
AGAGGGGATATGCAGATGTGGATCTTGGGGATGATACAAGGTTTATAGAG
TTCTACAATCTGGTTTTCATGGAATACAATAAAAAGGATGATGGAACACT
TGAGCCCCTAAAACAAAAGAACATCGATACTGGTCTTGGCTTGGAGCGTA
TGGCTCGCATCCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTGATT
TATCCAATTATAGAAAAGGCATCAGAACTGGCTAATATGTCATATGCCTT
GGCAGATGAGCAAACAAAATTGAAATTGAAGGTTGTAGGAGATCATCTAC
GTGCAATAGTATATCTCATATCCGATGGTGTTTTGCCATCAAATATTGGT
AGAGGTTATGTGGTTCGACGACTTATAAGAAGGGTTGTTCGTGCTGGCAG
GTCCCTTGGTATAAAGGGGGAAGTACAAGATAATCTTGAAGGAGCATTTT
TACCAGCAATTGCAGAAATAGTAATGGAATTAAGTACCCATATTGATTCA
GATGTCAAGATTAAAGCACCCCGTATTCTTGAGGAGCTGAAGAAGGAAGA
GCTTCATTTTGTGCAAACTCTAGAGAGAGGAGAAATCTTACTGGAAAAAA
TGTTAGCAGATGCATTATCAAATGCTCAGAAAAGTGGGACTATGCCTTGC
TTGTCTGGAAAAGACGCATTTCTTCTATATGACACTTTTGGATTTCCAGT
GGAGTTAACAACAGAAATTGCTGAAGAACATGGTGTTACTGTAGATATGA
ATGGTTTTGATCAAGAGATGGAAAACCAAAGGCGTCTATCTCGGGCTGCT
CATAATGTTGTTAAAATTGAGGCTGAAGATGGTGCTAGTCCTACAGAATA
TATAAATGAAACTGAATTTGTAGGATATGACAGCCTTTCCGCTCGAGCAG
TAGTAGAAAGCCTCATGGTAAATGGAAGTCCAGTGATACAGGTTTCTGAA
GGAAATGATGTAGAGGTTTTGCTGAATAGAACACCATTTTATGCTGAATC
AGGTGGTCAAATTGGAGATCATGGTTTTCTATATGTTACTGGAGGTGAAA
ACCAACAGACAGCTGTTGTCGAGATCAAGGATGTCCAAAAATCCCTGGGT
GACATATTTGTTCATAAGGGGACTATCAGAGAGGGGGTTTTGGAAGTTGG
CAGAGAAGTTGAAGCAGCTGTGGATGCAAAACTCAGGCAGCGGGCAAAGG
TTCATCACACTGCTACCCATTTGTTACAAGCAGCACTTAAGAAATTAATT
GGCCAGGAAATATCACAAGCTGGTTCATTGGTGGCTTTTGATCGTCTCAG
ATTTGATTTCAACTATGGCCATGCCCTTACTGACACTCAGCTTGAAGATA
TTGAGCGACTGATAAATGGGTGGGTTGGGGCTGCAGCATTTCTTGAAACA
AAAGTGATGCCTCTTAAGGACGCAAAAGAAGCTGGTGCCATTGCAATGTT
TGGGGAAAAATATGGTGAGCAGGTAAGAGTTGTGGAAGTTCCTGGCATAT
CAATGGAACTTTGTGGTGGGACCCATGTCAGAAATACTTCTGAAATACGT
GTCTTCAAAATAATATCTGAGCAAGGGATTGCATCTGGAGTCAGGCGCAT
AGAAGCTGTTGCTGGTGAAGCATTCATCGAATATATCAATGCCAGGGAAT
ATCATATGAAGAATCTATGCTCCATGCTCAAGGTGAAAGCTGAAGAAGTG
ACAACCAGGGTAGAAAAACTCTTAGAGGAGTTACGAATGTCAAGAAATGA
AGTTGCCAATTTGCATACAAAAGCAGCAGTGTATAAAGCATTAACGATTG
CAAGCAAGGCATTCGAAGTAGGAACTTCACAAAAGATAAGGGTACTAGTT
GAGTCCTTGGATGATGTGGATGCTGATTCACTAAAAGTTGCTGCTGAGCA
TTTAATTGATACACTGCAAGATCCTGCAGCAGTAATCTTGGGCTCCTGTC
CAGATGAAGGGAAGGTTAGTTTAGTTGCTGCTTTCACTCCAGCAGTGGTT
GATCTCGGTATACAGGCTGGGAAGTTTATAGGCCCCATAGCTAAGCTGTG
TGGTGGAGGAGGTGGTGGCAGGGCAAATTTTGCTCAAGCTGGTGGGAGGA
AGCCTGAGAATCTGCCAAGTGCCCTTGGAAAGGCACGGGAAGAGATTGTC
TCTATTCTATCTGAAAAAGCAAGCTGA
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protein sequence of Tc02v2_p003940.3

>Tc02v2_p003940.3 ID=Tc02v2_p003940.3|Name=Tc02v2_p003940.3|organism=Theobroma cacao|type=polypeptide|length=859bp
MAKILHESIIPRQVPCATTAQRCIRTNDVENVGRTARHHTFFEMLGNFSF
GDYFKKEAIQWSWELSTVEFGLPPERLWISVYEDDDEAFEIWHKEVGVPV
ERIKRMGEDDNFWMSGATGPCGPCSEIYYDFHPERGYADVDLGDDTRFIE
FYNLVFMEYNKKDDGTLEPLKQKNIDTGLGLERMARILQKVPNNYETDLI
YPIIEKASELANMSYALADEQTKLKLKVVGDHLRAIVYLISDGVLPSNIG
RGYVVRRLIRRVVRAGRSLGIKGEVQDNLEGAFLPAIAEIVMELSTHIDS
DVKIKAPRILEELKKEELHFVQTLERGEILLEKMLADALSNAQKSGTMPC
LSGKDAFLLYDTFGFPVELTTEIAEEHGVTVDMNGFDQEMENQRRLSRAA
HNVVKIEAEDGASPTEYINETEFVGYDSLSARAVVESLMVNGSPVIQVSE
GNDVEVLLNRTPFYAESGGQIGDHGFLYVTGGENQQTAVVEIKDVQKSLG
DIFVHKGTIREGVLEVGREVEAAVDAKLRQRAKVHHTATHLLQAALKKLI
GQEISQAGSLVAFDRLRFDFNYGHALTDTQLEDIERLINGWVGAAAFLET
KVMPLKDAKEAGAIAMFGEKYGEQVRVVEVPGISMELCGGTHVRNTSEIR
VFKIISEQGIASGVRRIEAVAGEAFIEYINAREYHMKNLCSMLKVKAEEV
TTRVEKLLEELRMSRNEVANLHTKAAVYKALTIASKAFEVGTSQKIRVLV
ESLDDVDADSLKVAAEHLIDTLQDPAAVILGSCPDEGKVSLVAAFTPAVV
DLGIQAGKFIGPIAKLCGGGGGGRANFAQAGGRKPENLPSALGKAREEIV
SILSEKAS*
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