Tc02v2_t003940.2

Overview
NameTc02v2_t003940.2
Unique NameTc02v2_t003940.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2730
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Productalanine--tRNA ligase, chloroplastic/mitochondrial, transcript variant X2
NoteAlanine--tRNA ligase, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607448
GenbankXM_018116217.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003940Tc02v2_g003940Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003940.2Tc02v2_p003940.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto87408auto87408Theobroma cacaoexon
exon-auto87409auto87409Theobroma cacaoexon
exon-auto87410auto87410Theobroma cacaoexon
exon-auto87411auto87411Theobroma cacaoexon
exon-auto87412auto87412Theobroma cacaoexon
exon-auto87413auto87413Theobroma cacaoexon
exon-auto87414auto87414Theobroma cacaoexon
exon-auto87415auto87415Theobroma cacaoexon
exon-auto87416auto87416Theobroma cacaoexon
exon-auto87417auto87417Theobroma cacaoexon
exon-auto87418auto87418Theobroma cacaoexon
exon-auto87419auto87419Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto87420auto87420Theobroma cacaoCDS
CDS-auto87421auto87421Theobroma cacaoCDS
CDS-auto87422auto87422Theobroma cacaoCDS
CDS-auto87423auto87423Theobroma cacaoCDS
CDS-auto87424auto87424Theobroma cacaoCDS
CDS-auto87425auto87425Theobroma cacaoCDS
CDS-auto87426auto87426Theobroma cacaoCDS
CDS-auto87427auto87427Theobroma cacaoCDS
CDS-auto87428auto87428Theobroma cacaoCDS
CDS-auto87429auto87429Theobroma cacaoCDS
CDS-auto87430auto87430Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003940.2 ID=Tc02v2_t003940.2|Name=Tc02v2_t003940.2|organism=Theobroma cacao|type=mRNA|length=2730bp
ATGGAAGATCAGCCAAAGGATTCCCTTGTCAGTGGGGATTCTATACGCCG
ACGATTTCTTGATTTTTATGCTTCCCGTGGTCACAAGATCATTCCTAGTG
CTTCTCTTGTGCCAGATGACCCAACAGTCCTACTGACAATTGCAGGAATG
CTTCCCTTCAAGCCTATATTCCTTGGAAAAATTCCCAGACAAGTACCTTG
TGCTACTACTGCACAAAGGTGTATACGTACAAATGATGTGGAGAATGTTG
GCAGAACGGCAAGGCATCATACATTTTTTGAAATGCTAGGCAATTTCTCC
TTTGGAGATTACTTTAAGAAGGAAGCAATCCAATGGTCATGGGAGCTTTC
CACCGTGGAATTTGGGTTGCCACCTGAGAGATTATGGATAAGTGTGTATG
AAGATGATGATGAAGCTTTTGAAATATGGCACAAGGAGGTGGGTGTTCCT
GTTGAACGCATAAAAAGAATGGGTGAAGATGACAACTTTTGGATGAGTGG
TGCTACTGGTCCCTGTGGCCCATGCTCTGAGATTTATTATGATTTCCATC
CTGAGAGGGGATATGCAGATGTGGATCTTGGGGATGATACAAGGTTTATA
GAGTTCTACAATCTGGTTTTCATGGAATACAATAAAAAGGATGATGGAAC
ACTTGAGCCCCTAAAACAAAAGAACATCGATACTGGTCTTGGCTTGGAGC
GTATGGCTCGCATCCTTCAAAAGGTTCCAAACAACTATGAAACTGACTTG
ATTTATCCAATTATAGAAAAGGCATCAGAACTGGCTAATATGTCATATGC
CTTGGCAGATGAGCAAACAAAATTGAAATTGAAGGTTGTAGGAGATCATC
TACGTGCAATAGTATATCTCATATCCGATGGTGTTTTGCCATCAAATATT
GGTAGAGGTTATGTGGTTCGACGACTTATAAGAAGGGTTGTTCGTGCTGG
CAGGTCCCTTGGTATAAAGGGGGAAGTACAAGATAATCTTGAAGGAGCAT
TTTTACCAGCAATTGCAGAAATAGTAATGGAATTAAGTACCCATATTGAT
TCAGATGTCAAGATTAAAGCACCCCGTATTCTTGAGGAGCTGAAGAAGGA
AGAGCTTCATTTTGTGCAAACTCTAGAGAGAGGAGAAATCTTACTGGAAA
AAATGTTAGCAGATGCATTATCAAATGCTCAGAAAAGTGGGACTATGCCT
TGCTTGTCTGGAAAAGACGCATTTCTTCTATATGACACTTTTGGATTTCC
AGTGGAGTTAACAACAGAAATTGCTGAAGAACATGGTGTTACTGTAGATA
TGAATGGTTTTGATCAAGAGATGGAAAACCAAAGGCGTCTATCTCGGGCT
GCTCATAATGTTGTTAAAATTGAGGCTGAAGATGGTGCTAGTCCTACAGA
ATATATAAATGAAACTGAATTTGTAGGATATGACAGCCTTTCCGCTCGAG
CAGTAGTAGAAAGCCTCATGGTAAATGGAAGTCCAGTGATACAGGTTTCT
GAAGGAAATGATGTAGAGGTTTTGCTGAATAGAACACCATTTTATGCTGA
ATCAGGTGGTCAAATTGGAGATCATGGTTTTCTATATGTTACTGGAGGTG
AAAACCAACAGACAGCTGTTGTCGAGATCAAGGATGTCCAAAAATCCCTG
GGTGACATATTTGTTCATAAGGGGACTATCAGAGAGGGGGTTTTGGAAGT
TGGCAGAGAAGTTGAAGCAGCTGTGGATGCAAAACTCAGGCAGCGGGCAA
AGGTTCATCACACTGCTACCCATTTGTTACAAGCAGCACTTAAGAAATTA
ATTGGCCAGGAAATATCACAAGCTGGTTCATTGGTGGCTTTTGATCGTCT
CAGATTTGATTTCAACTATGGCCATGCCCTTACTGACACTCAGCTTGAAG
ATATTGAGCGACTGATAAATGGGTGGGTTGGGGCTGCAGCATTTCTTGAA
ACAAAAGTGATGCCTCTTAAGGACGCAAAAGAAGCTGGTGCCATTGCAAT
GTTTGGGGAAAAATATGGTGAGCAGGTAAGAGTTGTGGAAGTTCCTGGCA
TATCAATGGAACTTTGTGGTGGGACCCATGTCAGAAATACTTCTGAAATA
CGTGTCTTCAAAATAATATCTGAGCAAGGGATTGCATCTGGAGTCAGGCG
CATAGAAGCTGTTGCTGGTGAAGCATTCATCGAATATATCAATGCCAGGG
AATATCATATGAAGAATCTATGCTCCATGCTCAAGGTGAAAGCTGAAGAA
GTGACAACCAGGGTAGAAAAACTCTTAGAGGAGTTACGAATGTCAAGAAA
TGAAGTTGCCAATTTGCATACAAAAGCAGCAGTGTATAAAGCATTAACGA
TTGCAAGCAAGGCATTCGAAGTAGGAACTTCACAAAAGATAAGGGTACTA
GTTGAGTCCTTGGATGATGTGGATGCTGATTCACTAAAAGTTGCTGCTGA
GCATTTAATTGATACACTGCAAGATCCTGCAGCAGTAATCTTGGGCTCCT
GTCCAGATGAAGGGAAGGTTAGTTTAGTTGCTGCTTTCACTCCAGCAGTG
GTTGATCTCGGTATACAGGCTGGGAAGTTTATAGGCCCCATAGCTAAGCT
GTGTGGTGGAGGAGGTGGTGGCAGGGCAAATTTTGCTCAAGCTGGTGGGA
GGAAGCCTGAGAATCTGCCAAGTGCCCTTGGAAAGGCACGGGAAGAGATT
GTCTCTATTCTATCTGAAAAAGCAAGCTGA
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protein sequence of Tc02v2_p003940.2

>Tc02v2_p003940.2 ID=Tc02v2_p003940.2|Name=Tc02v2_p003940.2|organism=Theobroma cacao|type=polypeptide|length=910bp
MEDQPKDSLVSGDSIRRRFLDFYASRGHKIIPSASLVPDDPTVLLTIAGM
LPFKPIFLGKIPRQVPCATTAQRCIRTNDVENVGRTARHHTFFEMLGNFS
FGDYFKKEAIQWSWELSTVEFGLPPERLWISVYEDDDEAFEIWHKEVGVP
VERIKRMGEDDNFWMSGATGPCGPCSEIYYDFHPERGYADVDLGDDTRFI
EFYNLVFMEYNKKDDGTLEPLKQKNIDTGLGLERMARILQKVPNNYETDL
IYPIIEKASELANMSYALADEQTKLKLKVVGDHLRAIVYLISDGVLPSNI
GRGYVVRRLIRRVVRAGRSLGIKGEVQDNLEGAFLPAIAEIVMELSTHID
SDVKIKAPRILEELKKEELHFVQTLERGEILLEKMLADALSNAQKSGTMP
CLSGKDAFLLYDTFGFPVELTTEIAEEHGVTVDMNGFDQEMENQRRLSRA
AHNVVKIEAEDGASPTEYINETEFVGYDSLSARAVVESLMVNGSPVIQVS
EGNDVEVLLNRTPFYAESGGQIGDHGFLYVTGGENQQTAVVEIKDVQKSL
GDIFVHKGTIREGVLEVGREVEAAVDAKLRQRAKVHHTATHLLQAALKKL
IGQEISQAGSLVAFDRLRFDFNYGHALTDTQLEDIERLINGWVGAAAFLE
TKVMPLKDAKEAGAIAMFGEKYGEQVRVVEVPGISMELCGGTHVRNTSEI
RVFKIISEQGIASGVRRIEAVAGEAFIEYINAREYHMKNLCSMLKVKAEE
VTTRVEKLLEELRMSRNEVANLHTKAAVYKALTIASKAFEVGTSQKIRVL
VESLDDVDADSLKVAAEHLIDTLQDPAAVILGSCPDEGKVSLVAAFTPAV
VDLGIQAGKFIGPIAKLCGGGGGGRANFAQAGGRKPENLPSALGKAREEI
VSILSEKAS*
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