Tc02v2_t003540.3

Overview
NameTc02v2_t003540.3
Unique NameTc02v2_t003540.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1098
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productisocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial, transcript variant X1
NoteIsocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607405
GenbankXM_018116386.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003540Tc02v2_g003540Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003540.3Tc02v2_p003540.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto86861auto86861Theobroma cacaoexon
exon-auto86862auto86862Theobroma cacaoexon
exon-auto86863auto86863Theobroma cacaoexon
exon-auto86864auto86864Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto86865auto86865Theobroma cacaoCDS
CDS-auto86866auto86866Theobroma cacaoCDS
CDS-auto86867auto86867Theobroma cacaoCDS
CDS-auto86868auto86868Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003540.3 ID=Tc02v2_t003540.3|Name=Tc02v2_t003540.3|organism=Theobroma cacao|type=mRNA|length=1098bp
ATGTCCACGTCACGCAGATCCGTTCCTCTTCTGAAAACCCTTATAACGCA
AAGAACCCATCGCCGAACCGTGACTTACATGCCCCGACCAGGGGATGGAG
CCCCGAGACCCGTAACTCTAATCCCAGGAGACGGAATCGGACCGTTGGTG
ACAAACGCGGTGGAACAAGTGATGGAAGCAATGCACGCGCCGGTTTACTT
CGAGAAGTATGAGGTTCACGGCGACATGAAGTGCGTGCCGCAGGAAGTCA
TAGATTCAATAAAGAAGAACAAAGTTTGTCTGAAAGGAGGGTTGAAGACT
CCAATGGGAGGCGGAGTTAGTTCACTGAATATGCAATTGAGAAAAGAATT
GGATTTATACGCTTCGTTGGTCAATTGCTGTAACTTACCAGGATTGCCAA
CCAGACATGAAAACGTGGACATTGTGGTAATTAGGGAGAATACGGAAGGG
GAATACTCGGGGCTCGAACATGAGGTCGTGCCTGGCGTTGTTGAGAGTCT
TAAGGTGATAACAAAGTTTTGTTCAGAGCGGATTGCAAAATATGCATTTG
AGTATGCCTATTTAAACAATAGAAAGAAGGTTACTGCTGTTCATAAGGCC
AATATAATGAAACTCGCTGATGGTTTGTTTTTGGAGTCTTGCCGGGAAGT
GGCGACCAAATATCCAAGTATCAAGTACAATGAAATTATTGTGGACAATT
GCTGTATGCAACTTGTCTCAAAACCAGAACAATTTGATGTCATGGTAACT
CCTAATCTTTACGGAAATCTTGTTGCAAATACAGCAGCGGGTATTGCTGG
AGGCACTGGTGTCATGCCGGGAGGTAATGTTGGAGCTGATCATGCTGTCT
TTGAGCAAGGCGCTTCAGCAGGGAATGTGGGAAAAGAAAAGATAGTAGAG
CAAAAGAAGGCAAATCCAGTGGCTTTGCTTCTCTCCTCTGCCATGATGTT
GAGGCACCTCCAGTTTCCTTCATTTGCTGATCGACTCGAAACTGCAGTGA
AACGTGTAATTTTAGAAGGTATGGACCGGACTAAAGATCTCGGTGGAGAT
AGCAGTACACAGGAAGTTGTTGATGCTGTCATTGCTAAGCTAGACTGA
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protein sequence of Tc02v2_p003540.3

>Tc02v2_p003540.3 ID=Tc02v2_p003540.3|Name=Tc02v2_p003540.3|organism=Theobroma cacao|type=polypeptide|length=366bp
MSTSRRSVPLLKTLITQRTHRRTVTYMPRPGDGAPRPVTLIPGDGIGPLV
TNAVEQVMEAMHAPVYFEKYEVHGDMKCVPQEVIDSIKKNKVCLKGGLKT
PMGGGVSSLNMQLRKELDLYASLVNCCNLPGLPTRHENVDIVVIRENTEG
EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKA
NIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT
PNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKIVE
QKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVILEGMDRTKDLGGD
SSTQEVVDAVIAKLD*
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