Tc02v2_t003300.1

Overview
NameTc02v2_t003300.1
Unique NameTc02v2_t003300.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length858
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductG-box-binding factor 4
NotePutative ABSCISIC ACID-INSENSITIVE 5-like protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607377
GenbankXM_007041522.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g003300Tc02v2_g003300Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p003300.1Tc02v2_p003300.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto86193auto86193Theobroma cacaoexon
exon-auto86194auto86194Theobroma cacaoexon
exon-auto86195auto86195Theobroma cacaoexon
exon-auto86196auto86196Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto86197auto86197Theobroma cacaoCDS
CDS-auto86198auto86198Theobroma cacaoCDS
CDS-auto86199auto86199Theobroma cacaoCDS
CDS-auto86200auto86200Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t003300.1 ID=Tc02v2_t003300.1|Name=Tc02v2_t003300.1|organism=Theobroma cacao|type=mRNA|length=858bp
ATGGCGTCGTCTAAGGTGATAACGACCACGTCAGCGACGAATCCTGATGT
GCCACGTCAGCCATCTCTGTGCTCTTCACTCTCCACTCTCCTTGCCGATC
TTCAAAACCAACAAAGCAATCAAAGCCAATCCCAGAACGGTTCAATGAGC
ATGGACGATCTTTTGAAAAACATCTACTCGTCCCCACCACCGCCACCAAC
TACTTCCGAAGCACACGCGCAGTTCCCCGGCGCGTCCATCTCACGGGAAG
GTAGTTTCTCGCTTCCGAAAGATGTGGCGAACAAGTCCGTCGACGAGGTG
TGGAAGGAGATCGTGGCCGGCGGAGGCGATCAGAGACAGGGAGGTCCAAC
GGAAGAGATGACGTTGGAGGATTTTTTGACCAAAGCTGGGGCGGTTAGAG
AAGAGGATGTTAGAGGAGTTGTTAATCAGGTGGGAGTTGGTGCAGGTGTT
TATGCTGTCGACCCGGCCGTTATCAACGGTGGTGGAAGTCAGTTTTCGAC
GTTTGGAAACAACGGCGGCGTTGATCATCAGAGATTGGTGGCGCCTGCAG
GTGGAGGCGCGAGAGGGAAACGACGCGCCGTTGAGGAACCGCCTTTGGAT
AAAGCGACGCAGCAGAAACAGAGAAGGATGATCAAGAACAGAGAATCTGC
TGCTAGGTCTAGAGAACGCAAACAGGCTTATACAGTTGAATTGGAATCTC
TAGTGACACAATTGGAAGAAGAGCAGACCCGGTTGCTGAGAGAAGAGGCT
GAGCTGCAAAAGGAGAGGTTTAAGCAGCTGATGGAGAACCTGATCCCTGT
TGAGGAAAAACGAAGACCACCTCGTGTTCTTAGGCGGGTGCATTCTATGC
AATGGTAG
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protein sequence of Tc02v2_p003300.1

>Tc02v2_p003300.1 ID=Tc02v2_p003300.1|Name=Tc02v2_p003300.1|organism=Theobroma cacao|type=polypeptide|length=286bp
MASSKVITTTSATNPDVPRQPSLCSSLSTLLADLQNQQSNQSQSQNGSMS
MDDLLKNIYSSPPPPPTTSEAHAQFPGASISREGSFSLPKDVANKSVDEV
WKEIVAGGGDQRQGGPTEEMTLEDFLTKAGAVREEDVRGVVNQVGVGAGV
YAVDPAVINGGGSQFSTFGNNGGVDHQRLVAPAGGGARGKRRAVEEPPLD
KATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEQTRLLREEA
ELQKERFKQLMENLIPVEEKRRPPRVLRRVHSMQW*
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