Tc02v2_t002880.1

Overview
NameTc02v2_t002880.1
Unique NameTc02v2_t002880.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2364
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productphosphatidylinositol 4-phosphate 5-kinase 8, transcript variant X4
NotePhosphatidylinositol 4-phosphate 5-kinase 8
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607333
GenbankXM_018116267.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g002880Tc02v2_g002880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p002880.1Tc02v2_p002880.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto84791auto84791Theobroma cacaoexon
exon-auto84792auto84792Theobroma cacaoexon
exon-auto84793auto84793Theobroma cacaoexon
exon-auto84794auto84794Theobroma cacaoexon
exon-auto84795auto84795Theobroma cacaoexon
exon-auto84796auto84796Theobroma cacaoexon
exon-auto84797auto84797Theobroma cacaoexon
exon-auto84798auto84798Theobroma cacaoexon
exon-auto84799auto84799Theobroma cacaoexon
exon-auto84800auto84800Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto84801auto84801Theobroma cacaoCDS
CDS-auto84802auto84802Theobroma cacaoCDS
CDS-auto84803auto84803Theobroma cacaoCDS
CDS-auto84804auto84804Theobroma cacaoCDS
CDS-auto84805auto84805Theobroma cacaoCDS
CDS-auto84806auto84806Theobroma cacaoCDS
CDS-auto84807auto84807Theobroma cacaoCDS
CDS-auto84808auto84808Theobroma cacaoCDS
CDS-auto84809auto84809Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t002880.1 ID=Tc02v2_t002880.1|Name=Tc02v2_t002880.1|organism=Theobroma cacao|type=mRNA|length=2364bp
ATGACTCGCTTAAAGAATCTGTTAGATGAGGATTCTGGAACTAGTGCTGA
ACAGCTCAGTCCTGTATCATGCACCAATGTGGAGAATGTTGAAAGGCTTA
ATGAGAAGGCCTTCTCAAATAGAGATTTCTATGTTGGTGATTTTAAGGAA
ATTCTTCCCCATGGCAAGGGAAAGTATACATGGTCAGATGGAACAGTATA
TGAGGGTGATTGGGAAGCAGGGAAAATGACTGGGAAAGGACTGTTCCTTT
GGCCATCCGGAGCAATGTATAAAGGTGATATTTCAGGGGGTTACCTTCAT
GGTACTGGTGCGTTTACAGCACCTGATGGATCCATTTATGAAGGGCAATG
GAGGATGAATATACGGCATGGATTTGGAAGAAAGAAGTATTCTAATTCAG
ATGTTTATGAAGGAGAATGGAAGGAAGGAGTACATGAAGGTAATGGTAGA
TATTTTTGGAATAATGGAAACAAATACACTGGGAATTGGAAACGTGGGAA
AATGCATGGTAGAGGAGCTATGGAATGGGTGAATGGTGATCAGTACAATG
GCTGTTGGTTAAATGGCTTCAGACAAGGGTCTGGAATTTATCAGTATGCA
GATGGGGGATATTATTTTGGAACATGGACCAGGGGCCTAAAGGATGGAAA
AGGATTATTCTATCCTGCTGGAAGTAAACGTCCCTCTCTAAAGAAGTTCT
GTGTTTCTCTGGGATATGATAATGGTCATAAAAGTGCGTTATCTCAATGT
CCGTCATTAAATTTGGAAGAATGCATGGTTAAGAAGCCAAGTGTTAAGCG
TAGTCTTTCTGAGAGGATCTCAGTAAGTGGTGTTTTAAGAAGTTCAGGTC
GAATCTCACATAAGACTGCTGAAAATTCAAGACTTTCTGATTCTGGTAGA
GAATTCATACGCCATAATTCCTCAGGCACATTCTCACTTGATTCTGATGC
TGGTCAAAGTGAGGTGCAAGAAAATACTGCTGTAGTTTACGAGAGGGAAT
ACATGCAAGGAGTTATGATTAAAGAGAGAATAAGAAATTATGGTGAACTA
TCACAGAAAGCTGAAAAGCGAACTAAAAGTCATGCCAAAGAAACAAAAAA
GAGTTTATGTGTTGGCGTTTTCGAAGGCAAAAACAGCTATCATTTGATGC
TTAATTTGCAACTTGGTATAAGGTATACTGTTGGCAAGATAACACCAGTA
CCTAAGCGTGAGGTTCGAACTGCTGATTTTGGAGATCGAGCTAGAATTAC
TATGTTTTTCCCCAGTAAGGGTTCACAGTTTACACCACCACACAAATCTA
TTGATTTCTACTGGAAGGATTATTGTCCTATGGTCTTCAGGAACCTGAGG
GAGATGTTCAAGCTAGATGCAGCAGAGTACATGATGTCCATTTGCGGTGA
TGACGGTTTGACAGATTTTTCTTCACCAGGGAAAAGTGGCAGTATCTTCT
ATCTTTCTCATGATGATAAATTTGTGATTAAGACATTGAAACGATCTGAA
CTCAAGGTTTTACACAAGATGCTGCCTAAGTACTACAATCATGTAAAAGA
GTATGAAAATACTCTCATAACAAAATTTTTTGGGCTCCACCGGATAACTT
TACCAGGCAGAAGAAAGGGATCAACCCACGGAAGATGTACAGATAAAGAT
AAAATTCGAGAAAATACTACATTGAAGGATCGTGATCTGTCATATGAATT
TCATATGGACAAATCATTGCGGAAATTCCTTTTTCACCAAATAGCTGTGG
ACTGCACGTTCTTGAAATCTCAACAGATAATTGATTATAGCCTTCTATTG
GGTTTACATTTTAGAGCTCCTGAGCAACTAAGTGGCCTCCTCGAAGCTCC
CAACATGATGCCCAATATTGAGAGCTCACCTGCTGGCGAAGCTTATGTTC
TGCTTCCACTAGGTCTGACAACAGAAGGGGAACTGTTATTTCCTTCAAAA
GGCTTCCGGCTGGTGGCCCATGAGCCCAGCTCTGTCAGCACTGAACCGGG
TCCTCACATCAGAGGAAGGGCGTTAAGAGCTTTCTCACTGGGTGACAAGG
AAGTTGATGTTTTGGTGCCTGGTACTGGAAGGTTACGAGTGCAATTAGGA
GTAAACATGCCAGCACAGGCTAATCACAAGCTTTCCCGTGTTGAGGCTGA
TTCAGCTGAAGTTGAACTTTTTGAGGTTTATGATGTGGTTCTCTATATGG
GAATAATTGATATTTTACAGGAATACAATGCAAAGAAGAAGGCTGAGCAT
GCATGCAAGTCAGTGAAATTGGACCCCATGTCAATTTCTGCTGTCGAACC
CGAGCTCTATGCTAAACGTTTTATCAACTTCTTGAGTCAAAAAGTTTTCC
CTGAAGAACCATGA
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protein sequence of Tc02v2_p002880.1

>Tc02v2_p002880.1 ID=Tc02v2_p002880.1|Name=Tc02v2_p002880.1|organism=Theobroma cacao|type=polypeptide|length=788bp
MTRLKNLLDEDSGTSAEQLSPVSCTNVENVERLNEKAFSNRDFYVGDFKE
ILPHGKGKYTWSDGTVYEGDWEAGKMTGKGLFLWPSGAMYKGDISGGYLH
GTGAFTAPDGSIYEGQWRMNIRHGFGRKKYSNSDVYEGEWKEGVHEGNGR
YFWNNGNKYTGNWKRGKMHGRGAMEWVNGDQYNGCWLNGFRQGSGIYQYA
DGGYYFGTWTRGLKDGKGLFYPAGSKRPSLKKFCVSLGYDNGHKSALSQC
PSLNLEECMVKKPSVKRSLSERISVSGVLRSSGRISHKTAENSRLSDSGR
EFIRHNSSGTFSLDSDAGQSEVQENTAVVYEREYMQGVMIKERIRNYGEL
SQKAEKRTKSHAKETKKSLCVGVFEGKNSYHLMLNLQLGIRYTVGKITPV
PKREVRTADFGDRARITMFFPSKGSQFTPPHKSIDFYWKDYCPMVFRNLR
EMFKLDAAEYMMSICGDDGLTDFSSPGKSGSIFYLSHDDKFVIKTLKRSE
LKVLHKMLPKYYNHVKEYENTLITKFFGLHRITLPGRRKGSTHGRCTDKD
KIRENTTLKDRDLSYEFHMDKSLRKFLFHQIAVDCTFLKSQQIIDYSLLL
GLHFRAPEQLSGLLEAPNMMPNIESSPAGEAYVLLPLGLTTEGELLFPSK
GFRLVAHEPSSVSTEPGPHIRGRALRAFSLGDKEVDVLVPGTGRLRVQLG
VNMPAQANHKLSRVEADSAEVELFEVYDVVLYMGIIDILQEYNAKKKAEH
ACKSVKLDPMSISAVEPELYAKRFINFLSQKVFPEEP*
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