Tc02v2_t002650.1

Overview
NameTc02v2_t002650.1
Unique NameTc02v2_t002650.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1071
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productmalate dehydrogenase, glyoxysomal
NoteMalate dehydrogenase, glyoxysomal
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607305
GenbankXM_007041392.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g002650Tc02v2_g002650Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p002650.1Tc02v2_p002650.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto84364auto84364Theobroma cacaoexon
exon-auto84365auto84365Theobroma cacaoexon
exon-auto84366auto84366Theobroma cacaoexon
exon-auto84367auto84367Theobroma cacaoexon
exon-auto84368auto84368Theobroma cacaoexon
exon-auto84369auto84369Theobroma cacaoexon
exon-auto84370auto84370Theobroma cacaoexon
exon-auto84371auto84371Theobroma cacaoexon
exon-auto84372auto84372Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto84373auto84373Theobroma cacaoCDS
CDS-auto84374auto84374Theobroma cacaoCDS
CDS-auto84375auto84375Theobroma cacaoCDS
CDS-auto84376auto84376Theobroma cacaoCDS
CDS-auto84377auto84377Theobroma cacaoCDS
CDS-auto84378auto84378Theobroma cacaoCDS
CDS-auto84379auto84379Theobroma cacaoCDS
CDS-auto84380auto84380Theobroma cacaoCDS
CDS-auto84381auto84381Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t002650.1 ID=Tc02v2_t002650.1|Name=Tc02v2_t002650.1|organism=Theobroma cacao|type=mRNA|length=1071bp
ATGGAGTTTAGTTCAGAGGCTAACCAGCGCATTGCCAGGATCTCAGCTCA
TCTCCACCCTCCAAATCACCAGATGAAGGAAAGTTCTGCTTTGAGGCGAG
CTGATTGCAGAGCTAAAGGAGGGGCACCGGGATTCAAAGTTGCTATCTTA
GGTGCAGCTGGAGGAATTGGCCAGCCTCTTGCAATGTTAATGAAGATGAA
TCCACTCGTCTCGGTCCTTCATCTTTATGATGTTGTGAACGCCCATGGTG
TCACAGCTGATCTCAGTCACATGGACACTGGTGCAGTGGTGCGTGGTTTC
TTGGGGCAGCCGGAGCTTGAGAGTGCTTTAACTGGCATGGACCTTGTGAT
CATACCTGCTGGTGTTCCAAGGAAGCCTGGAATGACAAGGGATGATCTTT
TCAACATCAATGCTGGAATCGTTAGGACACTTTGTGAGGGAGTTGCAAAG
TGCTGCCCAAACGCAATTGTTAATCTGATCAGCAACCCGGTGAATTCTAC
AGTTCCAATTGCAGCAGAGGTTTTTAAGAAGGCTGGTACTTATGATCCAA
AGCGACTTTTGGGAGTTACAACTCTTGACGTTGTCAGAGCAAACACTTTT
GTGGCGGAAGTCCTCGGTCTTGATCCTAGAGAAGTTAATGTCCCTGTTGT
TGGAGGTCATGCAGGAGTGACAATCTTGCCTCTTATGTCGCAGGTTAAAC
CTCCATGCACCTTCACCCCTGAAGAAACTGAGTACCTTACAAACCGCATT
CAAAATGGTGGGACAGAAGTTGTTGAGGCCAAAGCTGGAGCTGGATCTGC
TACACTGTCAATGGCATATGCAGCTGTCAAATTCGCAGATGCATGCCTCC
GAGGCTTGAGAGGAGATGCAGGAATCGTTGAATGTGCATTTGTAGCTTCG
CAGGTTACGGAGCTCCCTTTCTTTGCAACCAAGGTAAGACTCGGTCGTAC
TGGAGCTGAGGAAGTCTATCAGCTGGGGCCTCTAAACGAGTATGAGAGGG
TTGGGCTGGCGAAAGCAAAGAAAGAGTTAGCAGGAAGCATTCAGAAGGGG
ATTTCCTTTATCAAGAAATGA
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protein sequence of Tc02v2_p002650.1

>Tc02v2_p002650.1 ID=Tc02v2_p002650.1|Name=Tc02v2_p002650.1|organism=Theobroma cacao|type=polypeptide|length=357bp
MEFSSEANQRIARISAHLHPPNHQMKESSALRRADCRAKGGAPGFKVAIL
GAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAHGVTADLSHMDTGAVVRGF
LGQPELESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGVAK
CCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTF
VAEVLGLDPREVNVPVVGGHAGVTILPLMSQVKPPCTFTPEETEYLTNRI
QNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGIVECAFVAS
QVTELPFFATKVRLGRTGAEEVYQLGPLNEYERVGLAKAKKELAGSIQKG
ISFIKK*
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