Tc02v2_t002490.3

Overview
NameTc02v2_t002490.3
Unique NameTc02v2_t002490.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1230
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Productbranched-chain-amino-acid aminotransferase 6, transcript variant X3
NoteBranched-chain-amino-acid aminotransferase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18607290
GenbankXM_018116225.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g002490Tc02v2_g002490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p002490.3Tc02v2_p002490.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto84024auto84024Theobroma cacaoexon
exon-auto84025auto84025Theobroma cacaoexon
exon-auto84026auto84026Theobroma cacaoexon
exon-auto84027auto84027Theobroma cacaoexon
exon-auto84028auto84028Theobroma cacaoexon
exon-auto84029auto84029Theobroma cacaoexon
exon-auto84030auto84030Theobroma cacaoexon
exon-auto84031auto84031Theobroma cacaoexon
exon-auto84032auto84032Theobroma cacaoexon
exon-auto84033auto84033Theobroma cacaoexon
exon-auto84034auto84034Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto84035auto84035Theobroma cacaoCDS
CDS-auto84036auto84036Theobroma cacaoCDS
CDS-auto84037auto84037Theobroma cacaoCDS
CDS-auto84038auto84038Theobroma cacaoCDS
CDS-auto84039auto84039Theobroma cacaoCDS
CDS-auto84040auto84040Theobroma cacaoCDS
CDS-auto84041auto84041Theobroma cacaoCDS
CDS-auto84042auto84042Theobroma cacaoCDS
CDS-auto84043auto84043Theobroma cacaoCDS
CDS-auto84044auto84044Theobroma cacaoCDS
CDS-auto84045auto84045Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t002490.3 ID=Tc02v2_t002490.3|Name=Tc02v2_t002490.3|organism=Theobroma cacao|type=mRNA|length=1230bp
ATGAATTTGCAGGTGATCTTGCAGAAGATTCATATCATAGATTTCCAGGT
GTTTCTTATTGCCAGGCAAGCCATGTTTGGTCTAAGCATTTGCGCTAGAA
ATGTGAATCAACTTTCAAGAATTGAAAGCCTCCTGTCAAAGCCAAAGCTA
AGATCTTACGCCAGGCCTGTCACGACTGCACTGGAAAATTATGAATCCAG
CATTTACAGCAGCGGCAAGACAGAATATGCCAATGTCAATTGGGATGAAC
TTGGATTTGCTCTAACTAAAACAGATTACATGTACGTAATGAATTGCTCT
AAAGACGAAGAAATCTTTTCCGAAGGAATCCTCACTCGTTTTGGAAACAT
CGAGCTGTGCCCTTCATCTGGAATATTGAACTATGGCCAGGGATTATTCG
AGGGACTGAAAGCGTATAGGAAGGAAGATGACGGAATTCTGCTGTTCCGG
CCGGAAGAGAATGCCCTGAGGATGAAGATGGGTGCGGATAGAATGTGCAT
GCCATCGCCAACAGTTGAGCAATTCATAGATGCTGTTAAAAGGACTGTCC
TGGCCAACAAGCGATGGGTACCACCGCATGGGAGAGGGGCACTGTATATC
AGGCCACTGCTCATGGGAACTGGCCCAAATCTGGGAGTTAAGCCAGCATC
CGAGTACACATTCTTAGCTTATGCTTCCCCCGTGGGCAATTATCATAAGA
GTCCTATGAACTTGGTCGTTGAAGACAAGGTCTGTCGTGCTGCTCCTGGT
GGTACAGGAGGAGTCAAAGCTGTCACTAACTATTCACCAATCTACAAGAC
ATTAGGTCAAGCAAAAGCCAGAGGATTCACTGATGTCTTGTTTCTTGATG
CATTGACTGGAAGAAACATCGAGGAAGGTTCTGCATTCAACATCTTCGTT
CTCAAGGGAAATGTTATCTCTACTCCAACAGCACACGGGACTATTCTCCC
AGGAATCACAAGAAAAAGCATCATCGAAATCGCATCAACTCTTGGTTACC
AGGTTGAGGAACGAGATGTTCCGATCGAGGAGGTATTCGATGCTGAAGAA
GTCTTCTGCACAGGAACAGCTATGGTTCTCAAGTCTGTTGTAAGTATAAC
CTACCAGGGTAAAAGGATTGAATACAAAATGGGAGAAGAACCAGTGGCTC
AGAAATTGCATGCAACATTAACAGGAATTCAAACTGGTCTTATCGAGGAC
AAGATGGGATGGACAGTTGAGGTCGATTAG
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protein sequence of Tc02v2_p002490.3

>Tc02v2_p002490.3 ID=Tc02v2_p002490.3|Name=Tc02v2_p002490.3|organism=Theobroma cacao|type=polypeptide|length=410bp
MNLQVILQKIHIIDFQVFLIARQAMFGLSICARNVNQLSRIESLLSKPKL
RSYARPVTTALENYESSIYSSGKTEYANVNWDELGFALTKTDYMYVMNCS
KDEEIFSEGILTRFGNIELCPSSGILNYGQGLFEGLKAYRKEDDGILLFR
PEENALRMKMGADRMCMPSPTVEQFIDAVKRTVLANKRWVPPHGRGALYI
RPLLMGTGPNLGVKPASEYTFLAYASPVGNYHKSPMNLVVEDKVCRAAPG
GTGGVKAVTNYSPIYKTLGQAKARGFTDVLFLDALTGRNIEEGSAFNIFV
LKGNVISTPTAHGTILPGITRKSIIEIASTLGYQVEERDVPIEEVFDAEE
VFCTGTAMVLKSVVSITYQGKRIEYKMGEEPVAQKLHATLTGIQTGLIED
KMGWTVEVD*
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